SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene153578

Length: 484 nt

UniGene Fasta

>sp_v3.0_unigene153578
CACGCGCCCCGCCTCGTCGAGCCCTTCTTCCTCTGCGACATCCAGGTCCACTCGGACTCGCTGGGGAAGCTGTACTCGGTGCTGGGGCGGCGGCGGGCGAAGGTGTTCAAGGAGGAGCCGAAGGAGGGCACGCACGTGTTCACGGTGCAGGCGCACCTGCCGGTGGCGGAGAGCATCGGGTTCAGCGAGGAGCTCCTCAAGCGCACGTCGGGCTCCGCCTACCCGCAGCTCGTCTTCTCGCACTGGGACGTCCTCGACCAGGACCCCTACTGGACCCCCACCGAGGAGGAGCTGGAGCAGCACGGCGACAACGCGTCGGCGGTGGGCCTGAACGTGGCGCGGCGGCTGATGGACGACGTGCGGCGGCGGAAGGGCCTGTTCGTGGAGGAGAAGATCGTCGAGCACGCCGACAAGCAGCGCACGCTCAAGAAGAACAAGTGAGTTGCCCCGCGGTGTAGAATGCGCAATAAGAGTGCACCTGTGC

Ace file of the UniGene sp_v3.0_unigene153578

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Elongation factor Tu domain-containing protein n=1 Tax=Dictyostelium discoideum RepID=Q54WF2_DICDI	-	-	8.00141e-43	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	41%

Source	Gene names
Sma3	GSVIVT00005997001; LOC_Os03g44780; MICPUCDRAFT_29848; MICPUN_97868; OSTLU_438; Os02g0543300; Os03g0650700; OsI_12823; OsJ_07068; OsJ_11922; Ot20g00710; P0472F10.23; PHYPADRAFT_183758; POPTRDRAFT_1086132; POPTRDRAFT_1086137; RCOM_1548160; VITISV_019843;

Source	GOs	Term	Type	Identity
Sma3	translation elongation factor activity	GO:0003746	Molecular Function	-
Sma3	GTPase activity	GO:0003924	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Translation elongation factor EFG/EF2, C-terminal	IPR000640	-	-
Sma3	Protein synthesis factor, GTP-binding	IPR000795	-	-
Sma3	Translation elongation factor EFTu/EF1A, domain 2	IPR004161	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3	Translation elongation factor EFG/EF2, domain IV	IPR005517	-	-
Sma3	RNA polymerase I specific transcription initiation factor RRN3	IPR007991	-	-
Sma3	Ribosomal protein S5 domain 2-type fold, subgroup	IPR014721	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G22980.1	Ribosomal protein S5/Elongation factor G/III/V family protein chr3:8160269-8163316 REVERSE LENGTH=1015	9.94922e-44	52%
RefSeq	Arabidopsis thaliana	NP_188938.1	elongation factor EF-2 [Arabidopsis thaliana]	9.94922e-44	52%
RefSeq	Populus trichocarpa	XP_002313638.1	predicted protein [Populus trichocarpa]	3.0e-40	51%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ACX5

Fln msg: your sequence is shorter than subject: 147 - 267

Fln protein: HAPRLVEPFFLCDIQVHSDSLGKLYSVLGRRRAKVFKEEPKEGTHVFTVQAHLPVAESIGFSEELLKRTSGSAYPQLVFSHWDVLDQDPYWTPTEEELEQHGDNASAVGLNVARRLMDDVRRRKGLFVEEKIVEHADKQRTLKKNK*

Protein Length: 148

Fln nts: CACGCGCCCCGCCTCGTCGAGCCCTTCTTCCTCTGCGACATCCAGGTCCACTCGGACTCGCTGGGGAAGCTGTACTCGGTGCTGGGGCGGCGGCGGGCGAAGGTGTTCAAGGAGGAGCCGAAGGAGGGCACGCACGTGTTCACGGTGCAGGCGCACCTGCCGGTGGCGGAGAGCATCGGGTTCAGCGAGGAGCTCCTCAAGCGCACGTCGGGCTCCGCCTACCCGCAGCTCGTCTTCTCGCACTGGGACGTCCTCGACCAGGACCCCTACTGGACCCCCACCGAGGAGGAGCTGGAGCAGCACGGCGACAACGCGTCGGCGGTGGGCCTGAACGTGGCGCGGCGGCTGATGGACGACGTGCGGCGGCGGAAGGGCCTGTTCGTGGAGGAGAAGATCGTCGAGCACGCCGACAAGCAGCGCACGCTCAAGAAGAACAAGTGA___GTTGCCCCGCGGTGTAGAATGCGCAATAAGAGTGCACCTGTGC

Fln Alignment:

HLKU4M004IFJAA___PRLVEPFFLCDIQVHSDSLGKLYSVLGRRRAKVFKEEPKEGTHVFTVQAHLPVAESIGFSEELLKRTSGSAYPQLVFSHWDVLDQDPYWTPTEEELEQHGDNASAVGLNVARRLMDDVRRRKGL
D5ACX5________________PRLLEPVYLVEIQAPENALGGIYGVLNQKRGHVFEEMQRQGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMGSDPLETGSQ-----------------AGQLVTDIRKRKGL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain