SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene153576

Length: 248 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene153576
ACACCACACCCAAGAAGAAGGCGCACATTGCAAGAAGGTCAAGTTGGCTATTTTGAAGTATTACAAGATTGACGGAGAGGGAAAAATCACCCGTCTGCGCCGTGAATGTCCTTCTGAGGGATGTGGAGCTGCCTGCTTCATGGCTAATCACGAAGATCGTCAGTACTGTGGAAAGTGCCATGCTACCTTCACAATCACCAAGAATGCCTCTGCCTAAATAAATAAGTGCGTTGTGCGCACGTTTATTC

Ace file of the UniGene sp_v3.0_unigene153576 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ubiquitin-40S ribosomal protein S27a n=60 Tax=Eumetazoa RepID=RS27A_DROME	-	-	5.0e-18	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	61%

Source	Gene names
Sma3	At1g23410; At2g47110; At3g62250; F14M4.6; F26F24.28; F28C11.5; GSVIVT00006610001; GSVIVT00027151001; GSVIVT00028185001; MICPUCDRAFT_51948; MICPUN_90428; MUB1; MUB2; OSTLU_32483; Os01g0328400; Os05g0160200; OsI_01687; OsI_01691; OsJ_01558; OsJ_17209; P0537

Source	GOs	Term	Type	Identity
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-
Sma3	protein modification process	GO:0006464	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ubiquitin	IPR000626	-	0.0	-
Sma3	Ribosomal protein S27a	IPR002906	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G62250.1	UBQ5 ubiquitin 5 chr3:23037138-23037611 FORWARD LENGTH=157	1.0e-21	63%
RefSeq	Arabidopsis thaliana	NP_001189768.1	ubiquitin-40S ribosomal protein S27a-2 [Arabidopsis thaliana]	1.0e-21	58%
RefSeq	Populus trichocarpa	XP_002297752.1	predicted protein [Populus trichocarpa]	3.0e-21	61%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKJ2

Fln msg: your sequence is shorter than subject: 72 - 156

Fln protein: HHTQEEGAHCKKVKLAILKYYKIDGEGKITRLRRECPSEGCGAACFMANHEDRQYCGKCHATFTITKNASA*

Protein Length: 73

Fln nts: ACACCACACCCAAGAAGAAGGCGCACATTGCAAGAAGGTCAAGTTGGCTATTTTGAAGTATTACAAGATTGACGGAGAGGGAAAAATCACCCGTCTGCGCCGTGAATGTCCTTCTGAGGGATGTGGAGCTGCCTGCTTCATGGCTAATCACGAAGATCGTCAGTACTGTGGAAAGTGCCATGCTACCTTCACAATCACCAAGAATGCCTCTGCCTAA___ATAAATAAGTGCGTTGTGCGCACGTTTATTC

Fln Alignment:

HLKU4M004IV9QW___KKVKLAILKYYKIDGEGKITRLRRECPSEGCGAACFMANHEDRQYCGKCHATFTITKNAS
B8LKJ2________________KKVKLAVLQYYKVDDSGKVQRLRKECPNQDCGAGTFMANHFDRHYCGKCGLTYVYQKAAA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain