SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene153523

Length: 500 nt

UniGene Fasta

>sp_v3.0_unigene153523
CAAGGAGTTCGCCAAGAAGCACTTCCCCTGCACTCCCGTGTTGGACTTTGCTCTGGCGGTCGAGCAGGTGACCACCAAGAAGAAATCCACTCTCATTCTGAATGTGGATGGATGCATTGCTGCCTGCTTTGTGGATCTGTTGAGGAACTGTGGAGCCTTTGACCTGAACGAGGCCAACGAGTTGCTGGCCAATGGATGCTTGAATGGATTGTTCGTCACTGGAAGATCTATCGGATTTATTGGACACTTTATCGATCAAAAGAGACTTAAGCAAGGATTGTACAGACATCCTTGGGATGATATTTCTTATCAGACTGATCTGTAATTTCCCTTTGTTGCGGTTAGTCCTCTTCTCCCACTGCCAGTATCCGTTTGTCGTCTTTGCACAGCCTACAACCTGACTGTTGGTCCACAATGGGTCTAGTTGGTAGTTAGTTACAATGTTCTTTTAGTTCTATTTGTTGTTGTGTCGGTTTGAATTAATAATGTTTGATCTTGCC

Ace file of the UniGene sp_v3.0_unigene153523

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP-citrate synthase n=1 Tax=Phytophthora infestans T30-4 RepID=D0NZ33_PHYIT	-	-	1.96182e-44	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Sma3	ATP citrate lyase	-	-	1.999e-08	-

Source	ECs	Term	Type	e value	Identity
Sma3	ATP citrate synthase.	EC:2.3.3.8	-	3.998e-08	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Citrate cycle (TCA cycle)	00020		3.998e-08	%
Sma3	Carbon fixation pathways in prokaryotes	00720		3.998e-08	%
Sma3	Biosynthesis of phenylpropanoids	01061		3.998e-08	%
Sma3	Biosynthesis of terpenoids and steroids	01062		3.998e-08	%
Sma3	Biosynthesis of alkaloids derived from shikimate pathway	01063		3.998e-08	%
Sma3	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064		3.998e-08	%
Sma3	Biosynthesis of alkaloids derived from histidine and purine	01065		3.998e-08	%
Sma3	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066		3.998e-08	%
Sma3	Biosynthesis of plant hormones	01070		3.998e-08	%
Sma3	Metabolic pathways	01100		3.998e-08	%
Sma3	Biosynthesis of secondary metabolites	01110		3.998e-08	%
Sma3	Transferred entry: 2.3.3.8.	EC:4.1.3.8	-	3.998e-08	-

Source	Gene names
Sma3	ACL; ACLB1; At3g06650; At5g49460; CHLREDRAFT_186611; F5E6.2; GSVIVT00033143001; MtrDRAFT_AC152185g14v2; Os01g0300200; OsI_01541; OsJ_01435; P0487H02.31; P0682B08.9; PHATRDRAFT_54477; PHYPADRAFT_179458; PHYPADRAFT_208338; POPTRDRAFT_656642; POPTRDRAFT_7239

Source	GOs	Term	Type	Identity
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	citrate lyase complex	GO:0009346	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	ATP citrate synthase activity	GO:0003878	Molecular Function	-
Sma3	succinate-CoA ligase (ADP-forming) activity	GO:0004775	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3		GO:0008415	Molecular Function	-
Sma3	lyase activity	GO:0016829	Molecular Function	-
Sma3	acetyl-CoA biosynthetic process	GO:0006085	Biological Process	-
Sma3	cellular carbohydrate metabolic process	GO:0044262	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	CoA-binding	IPR003781	-	-
Sma3	Succinyl-CoA ligase, alpha subunit	IPR005810	-	-
Sma3	ATP-citrate lyase/succinyl-CoA ligase	IPR005811	-	-
Sma3	ATP-grasp fold, subdomain 2	IPR013816	-	-
Sma3	ATP-citrate synthase	IPR014608	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Succinyl-CoA synthetase-like	IPR016102	-	-
Sma3	Citrate synthase-like, large alpha subdomain	IPR016142	-	-
Sma3	Citrate synthase-like, small alpha subdomain	IPR016143	-	-
Sma3	ATP-citrate lyase/succinyl-CoA ligase, active site	IPR017440	-	-
Sma3	Succinyl-CoA synthetase, beta subunit, conserved site	IPR017866	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G49460.1	ACLB-2 ATP citrate lyase subunit B 2 chr5:20055048-20058195 FORWARD LENGTH=608	2.0e-29	51%
RefSeq	Arabidopsis thaliana	NP_199757.1	ATP citrate lyase subunit B 2 [Arabidopsis thaliana]	2.0e-29	51%
RefSeq	Populus trichocarpa	XP_002312331.1	predicted protein [Populus trichocarpa]	5.0e-30	53%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PRY4

Fln msg: your sequence is shorter than subject: 108 - 608

Fln protein: KEFAKKHFPCTPVLDFALAVEQVTTKKKSTLILNVDGCIAACFVDLLRNCGAFDLNEANELLANGCLNGLFVTGRSIGFIGHFIDQKRLKQGLYRHPWDDISYQTDL*

Protein Length: 109

Fln nts: CAAGGAGTTCGCCAAGAAGCACTTCCCCTGCACTCCCGTGTTGGACTTTGCTCTGGCGGTCGAGCAGGTGACCACCAAGAAGAAATCCACTCTCATTCTGAATGTGGATGGATGCATTGCTGCCTGCTTTGTGGATCTGTTGAGGAACTGTGGAGCCTTTGACCTGAACGAGGCCAACGAGTTGCTGGCCAATGGATGCTTGAATGGATTGTTCGTCACTGGAAGATCTATCGGATTTATTGGACACTTTATCGATCAAAAGAGACTTAAGCAAGGATTGTACAGACATCCTTGGGATGATATTTCTTATCAGACTGATCTGTAA___TTTCCCTTTGTTGCGGTTAGTCCTCTTCTCCCACTGCCAGTATCCGTTTGTCGTCTTTGCACAGCCTACAACCTGACTGTTGGTCCACAATGGGTCTAGTTGGTAGTTAGTTACAATGTTCTTTTAGTTCTATTTGTTGTTGTGTCGGTTTGAATTAATAATGTTTGATCTTGCC

Fln Alignment:

HLKU4M004JHV7J___KEFAKKHFPCTPVLDFALAVEQVTTKKKSTLILNVDGCIAACFVDLLRNCGAFDLNEANELLANGCLNGLFVTGRSIGFIGHFIDQKRLKQGLYRHPWDDISY
C0PRY4________________QEYARTHFPAVKYMDYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLVVSGMFSQPEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain