SustainPineDB

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Assembly info
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SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene153507

Length: 399 nt

UniGene Fasta

>sp_v3.0_unigene153507
CTTTCCTTTGCTCCCACTTTGGTTGCCATGGCTGACGAAACGTACGAACGCACTCAGGACAACGCCTCCAAGGTTGTTCCTGCTCAAGCCTCCTCCATTCGTAAGGGTGGGCACGTCGTCATCAAGGGCCGCCCTTGCAAGGTGGTCGAAACTTCCACTTCGAAGACCGGCAAACACGGCAGTGCTAAGGTGCATTTCGTCGCCATTGATATCTTCACTGGAAAGAAAAATGAAGATATTTGCCCGTCTACTCACAATATGGAAGTCCCAGTTGTAAACCGTATTGACTACGGTTTGCTTGACATCACTGATGATGGATTTCTTTCCTTGTTGCTTCCGTCTGGGGACACAAAGGATGATTTAAAAGCACCCCCAATGACCGAAGAGCTTGGACAAACA

Ace file of the UniGene sp_v3.0_unigene153507

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Eukaryotic translation initiation factor 5A n=1 Tax=Dianthus caryophyllus RepID=IF5A_DIACA	-	-	7.0e-39	71%
FL-Next	tr=Eukaryotic translation initiation factor 5A 4; Picea abies (Norway spruce) (Picea excelsa).	-	-	0.0	64%
Sma3	Eukaryotic translation initiation factor 5A	-	-	6.397e-28	-

Source	Gene names
Sma3	At1g13950; At1g26630; At1g69410; CHLREDRAFT_126557; EIF-5A1; EIF-5A2; EIF5A; EIF5A1; EIF5A2; EIF5A3; EIF5A4; EIF5A5; EIFSV1; F10D13.8; F16A14.17; F23O10.2; F7A19.4; GSVIVT00004748001; GSVIVT00016285001; GSVIVT00032771001; LOC_Os03g55150; LOC_Os12g32240; M

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	translation initiation factor activity	GO:0003743	Molecular Function	-
Sma3	translation elongation factor activity	GO:0003746	Molecular Function	-
Sma3	translational initiation	GO:0006413	Biological Process	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	xylem development	GO:0010089	Biological Process	-
Sma3	host programmed cell death induced by symbiont	GO:0034050	Biological Process	-
Sma3	defense response to bacterium	GO:0042742	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Translation elongation factor IF5A	IPR001884	-	-
Sma3	KOW	IPR005824	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	Translation protein SH3-like, subgroup	IPR014722	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Translation elongation factor, IF5A, hypusine site	IPR019769	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G69410.1	ATELF5A-3, ELF5A-3 eukaryotic elongation factor 5A-3 chr1:26089301-26090194 FORWARD LENGTH=158	70%
RefSeq	Arabidopsis thaliana	NP_001077597.1	translation initiation factor eIF-5A [Arabidopsis thaliana]	70%
RefSeq	Populus trichocarpa	XP_002308400.1	predicted protein [Populus trichocarpa]	62%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: Q3ZDK5

Fln msg: Distance to subject end: 32 aas, your sequence is shorter than subject: 124 - 159

Fln protein: MADETYERTQDNASKVVPAQASSIRKGGHVVIKGRPCKVVETSTSKTGKHGSAKVHFVAIDIFTGKKNEDICPSTHNMEVPVVNRIDYGLLDITDDGFLSLLLPSGDTKDDLKAPPMTEELGQT

Protein Length: 125

Fln nts: CTTTCCTTTGCTCCCACTTTGGTTGCC_-_ATGGCTGACGAAACGTACGAACGCACTCAGGACAACGCCTCCAAGGTTGTTCCTGCTCAAGCCTCCTCCATTCGTAAGGGTGGGCACGTCGTCATCAAGGGCCGCCCTTGCAAGGTGGTCGAAACTTCCACTTCGAAGACCGGCAAACACGGCAGTGCTAAGGTGCATTTCGTCGCCATTGATATCTTCACTGGAAAGAAAAATGAAGATATTTGCCCGTCTACTCACAATATGGAAGTCCCAGTTGTAAACCGTATTGACTACGGTTTGCTTGACATCACTGATGATGGATTTCTTTCCTTGTTGCTTCCGTCTGGGGACACAAAGGATGATTTAAAAGCACCCCCAATGACCGAAGAGCTTGGACAAACA

Fln Alignment:

HLKU4M004JTUIW___MADETYE---RTQDNASKVVPAQASSIRKGGHVVIKGRPCKVVETSTSKTGKHGSAKVHFVAIDIFTGKKNEDICPSTHNMEVPVVNRIDYGLLDITDDGFLSLLLPSGDTKDDLKAP
Q3ZDK5________________MSDEEHHFDHKGESGASKTFPQQAGAIRKSGYIVVKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTSKKLEDIVPSSHNCDVPEVIRTDYQLIDISEDGFVSLLTDSGDTKDDLRLP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain