SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene153496

Length: 400 nt

UniGene Fasta

>sp_v3.0_unigene153496
ATTGTCGCCGCGAAGAGCTTCAGAGCTAAACACCCAGAATTGGATGTCCCTAACCTTTATGTCGTGAAGTTGTGCACATCACTCAAAAGCCGCAATTTCGTGACTGAAAACTTTTGCTGGAACCACTATTACTACTACCTCACAAACGACGGTATCCAATACCTCCGTGAGTTCTTGCACTTGCCTGTTGATATTGTTCCTGCAACCCTTAAGAAACGAGCCCCTGCAGTGAAACCTGCCGGAGCAGCCCCAACAACCGGTGGCTCAGGTTATGCTGGACGTGGTGGAAAATTCGGAGGAAAGAAAGACGGAGGTGCCCCTACAGACTTCCAAGCCACATTCGATCAAGGAACTGGACGTGGTCGCGGAGCTGCTCCAGCCGCACCTGAAGGAAACACTG

Ace file of the UniGene sp_v3.0_unigene153496

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative ribosomal protein S10 n=1 Tax=Sipunculus nudus RepID=A8UA06_SIPNU	-	-	4.0e-23	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%
Sma3	40S ribosomal protein S10	-	-	2.395e-15	-

Source	Gene names
Sma3	AT5G52650; At4g25740; At5g52650; B0222C05.3; CHLREDRAFT_149993; F14M19.20; GSVIVT00002547001; OSJNBa0040I22.20; OSTLU_28709; Os01g0962600; Os02g0549600; Os04g0430100; OsI_05313; OsI_07603; OsI_15930; OsJ_04856; OsJ_07087; OsJ_14842; Ot01g01020; P0451A10.8

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Plectin/S10, N-terminal	IPR005326	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G52650.1	RNA binding Plectin/S10 domain-containing protein chr5:21355781-21357003 REVERSE LENGTH=179	2.0e-24	60%
RefSeq	Arabidopsis thaliana	NP_200077.1	40S ribosomal protein S10-3 [Arabidopsis thaliana]	3.0e-24	60%
RefSeq	Populus trichocarpa	XP_002305937.1	predicted protein, partial [Populus trichocarpa]	4.0e-26	62%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NZ81

Fln msg: Distance to subject end: 31 aas, your sequence is shorter than subject: 133 - 185

Fln protein: IVAAKSFRAKHPELDVPNLYVVKLCTSLKSRNFVTENFCWNHYYYYLTNDGIQYLREFLHLPVDIVPATLKKRAPAVKPAGAAPTTGGSGYAGRGGKFGGKKDGGAPTDFQATFDQGTGRGRGAAPAAPEGNT

Protein Length: 134

Fln nts: ATTGTCGCCGCGAAGAGCTTCAGAGCTAAACACCCAGAATTGGATGTCCCTAACCTTTATGTCGTGAAGTTGTGCACATCACTCAAAAGCCGCAATTTCGTGACTGAAAACTTTTGCTGGAACCACTATTACTACTACCTCACAAACGACGGTATCCAATACCTCCGTGAGTTCTTGCACTTGCCTGTTGATATTGTTCCTGCAACCCTTAAGAAACGAGCCCCTGCAGTGAAACCTGCCGGAGCAGCCCCAACAACCGGTGGCTCAGGTTATGCTGGACGTGGTGGAAAATTCGGAGGAAAGAAAGACGGAGGTGCCCCTACAGACTTCCAAGCCACATTCGATCAAGGAACTGGACGTGGTCGCGGAGCTGCTCCAGCCGCACCTGAAGGAAACACTG

Fln Alignment:

HLKU4M004I7YTY___AKHPELDVPNLYVVKLCTSLKSRNFVTENFCWNHYYYYLTNDGIQYLREFLHLPVDIVPATLKK
A9NZ81________________AKHPEIDVPNLQVIKLMQSFKSKEYVRESFAWMHYYWYLTNDGIEYLRTYLNLPSEIVPATLKK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain