SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene153451

Length: 258 nt

UniGene Fasta

>sp_v3.0_unigene153451
TATTGGCTGCATTACTCGGAGATATTGACAGAATCGATGGTTCAGTCGAAGTGAATGGATCCATCGCTTACGTACAACAAAATAGCATGGATTCAAAATAGCAACATTGATGGATAATATTCTATTTGGTAAGACCATACGACCATGAACGCTATCGCAATGCCATCCGTGTATGCGAATTAGAGTCTGACTTGAAAGTATTCCCAGCTGGGGATCAAACTGAAATCGGAGAGAAAGGTATCAATTTATCCGGAGGAC

Ace file of the UniGene sp_v3.0_unigene153451

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP-binding cassette transporter, subfamily C, member 12, SmABCC12 n=2 Tax=Selaginella moellendorffii RepID=D8RAX3_SELML	-	-	9.0e-16	45%
FL-Next	Isoform 2 of ABC transporter C family member 8 OS=Arabidopsis thaliana GN=ABCC8	-	-	0.0	44%

Source	Gene names
Sma3	OsI_01862; OsJ_01721;

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATPase activity, coupled to transmembrane movement of substances	GO:0042626	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ABC transporter, transmembrane domain	IPR001140	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	ABC transporter, integral membrane type 1	IPR017940	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002301476.1	multidrug resistance protein ABC transporter family [Populus trichocarpa]	2.0e-16	50%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8LGU1-2

Fln msg: Distance to subject end: 727 aas, your sequence is shorter than subject: 85 - 1453

Fln protein: LAALLGDIDRIDGSVEVNGSIAYVQQNSMDSK*QH*WIIFYLVRPYDHERYRNAIRVCELESDLKVFPAGDQTEIGEKGINLSGG

Protein Length: 86

Fln nts: TATTGGCTGCATTACTCGGAGATATTGACAGAATCGATGGTTCAGTCGAAGTGAATGGATCCATCGCTTACGTACAACAAAATAGCATGGATTCAAAATAGCAACATTGATGGATAATATTCTATTTGGTAAGACCATACGACCATGAACGCTATCGCAATGCCATCCGTGTATGCGAATTAGAGTCTGACTTGAAAGTATTCCCAGCTGGGGATCAAACTGAAATCGGAGAGAAAGGTATCAATTTATCCGGAGGAC

Fln Alignment:

HLKU4M004JZXVF___LAALLGDIDRIDGSVEVNGSIAYVQQNSMDSK*QH*WIIFYLVR-------PYDHERYRNAIRVCELESDLKVFPAGDQTEIGEKGINLSGG
Q8LGU1-2______________LHAVLGEIPKVSGTVKVFGSIAYVSQTS--------WIQSGTIRDNILYGKPMESRRYNAAIKACALDKDMNGFGHGDLTEIGQRGINLSGG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain