SustainPineDB

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Assembly info
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SNPs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene153424

Length: 111 nt

UniGene Fasta

>sp_v3.0_unigene153424
TGTTCCAGAGCTCACTCAACAACAATTTGATGCCAAGAACATGATGTGCGCTGCTGATCCTCGTCATGGCAGATACCTCACCTGTGCTTGCATGTTCAGAGGTCGTATGTC

Ace file of the UniGene sp_v3.0_unigene153424

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Beta-tubulin (Fragment) n=1 Tax=Aureococcus anophagefferens RepID=Q5JBR0_9STRA	-	-	8.0e-14	94%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Sma3	Beta-tubulin	-	-	1.193e-13	-

Source	Gene names
Sma3	btub; btub1; btub2; tubb;

Source	GOs	Term	Type	Identity
Sma3	microtubule	GO:0005874	Cellular Component	-
Sma3	protein complex	GO:0043234	Cellular Component	-
Sma3	GTPase activity	GO:0003924	Molecular Function	-
Sma3	structural molecule activity	GO:0005198	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	microtubule-based movement	GO:0007018	Biological Process	-
Sma3	protein polymerization	GO:0051258	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Tubulin	IPR000217	-	-
Sma3	Beta tubulin	IPR002453	-	-
Sma3	Tubulin/FtsZ, GTPase domain	IPR003008	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-
Sma3	Tubulin/FtsZ, 2-layer sandwich domain	IPR018316	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G75780.1	TUB1 tubulin beta-1 chain chr1:28451378-28453602 REVERSE LENGTH=447	1.0e-15	83%
RefSeq	Arabidopsis thaliana	NP_177706.1	tubulin beta [Arabidopsis thaliana]	2.0e-15	83%
RefSeq	Populus trichocarpa	XP_002336980.1	tubulin, beta chain, partial [Populus trichocarpa]	1.0e-16	83%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PPY0

Fln msg: Distance to subject end: 123 aas, your sequence is shorter than subject: 36 - 445

Fln protein: VPELTQQQFDAKNMMCAADPRHGRYLTCACMFRGRM

Protein Length: 37

Fln nts: TGTTCCAGAGCTCACTCAACAACAATTTGATGCCAAGAACATGATGTGCGCTGCTGATCCTCGTCATGGCAGATACCTCACCTGTGCTTGCATGTTCAGAGGTCGTATGTC

Fln Alignment:

HLKU4M004JCPYY___VPELTQQQFDAKNMMCAADPRHGRYLTCACMFRGRM
C0PPY0________________IPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain