SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene153422

Length: 485 nt

UniGene Fasta

>sp_v3.0_unigene153422
CAAGGAGCGTCTCGGAAAGTTGTCAGGAGGAGTTGCTGTTCTCAAGGTCGGAGGTGCTAGCGAAGTTGAAGTCGGAGAAAAGAAGGATAGAATTACTGACGCTCTCAACGCAACAAGAGCCGCTGTAGAAGAAGGTATCGTTCCCGGAGGAGGTGTTGCCTTGCTCCAAGCTTCCAAGACCCTTGACAAGTTGTTGGCCGATTCTTCTCTCACATTCGATCAACGCCAAGGAGTTGAAATCATCATCAACGCTCTCCGAATTCCATGCAAGACTATTGCTGACAATGCTGGATTTGAAGGTGCTGTCGTCGTTGGAAAGCTGTTGGAATCCACTGATAACAAGTGGGGATTTGATGCCCACGAAGGCAAATACCGCAACTTGGTTGAGGCTGGTATCATCGATCCAACCAAGGTCGTACGCACAGCTCTCGTTGATGCCTCAAGTGTTGCTGGTCTCTTGACCACCACCGAAGCTGTCATCGTTG

Ace file of the UniGene sp_v3.0_unigene153422

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Chaperonin CPN60-1, mitochondrial n=3 Tax=rosids RepID=CH61_CUCMA	-	-	0.0	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Sma3	groEL protein	-	-	5.715e-38	-

Source	Gene names
Sma3	AT1G55490; AT5G56500; At1g26230; At1g55490; At2g28000; At2g33210; At3g13470; At3g13860; At3g23990; At5g18820; At5g56500; CHLREDRAFT_115081; CHLREDRAFT_132530; CHLREDRAFT_136288; CHLREDRAFT_24547; CPN-60; CPN-60 alpha; CPN60; CPN60 mitochondrial; CPN60-1;

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	mitochondrial matrix	GO:0005759	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	plastid	GO:0009536	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	thylakoid	GO:0009579	Cellular Component	-
Sma3	cyanelle	GO:0009842	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	cytosolic ribosome	GO:0022626	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	unfolded protein binding	GO:0051082	Molecular Function	-
Sma3	protein folding	GO:0006457	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	mitochondrion organization	GO:0007005	Biological Process	-
Sma3	cell death	GO:0008219	Biological Process	-
Sma3	response to heat	GO:0009408	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	systemic acquired resistance	GO:0009627	Biological Process	-
Sma3	protein refolding	GO:0042026	Biological Process	-
Sma3	cellular protein metabolic process	GO:0044267	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	chaperone mediated protein folding requiring cofactor	GO:0051085	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, DHHC-type, palmitoyltransferase	IPR001594	-	-
Sma3	Diguanylate phosphodiesterase, EAL domain	IPR001633	-	-
Sma3	Chaperonin Cpn60	IPR001844	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Chaperonin Cpn60/TCP-1	IPR002423	-	-
Sma3	Chaperone, tailless complex polypeptide 1	IPR017998	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G33210.1	HSP60-2 heat shock protein 60-2 chr2:14075093-14078568 REVERSE LENGTH=585	70%
RefSeq	Arabidopsis thaliana	NP_001189665.1	chaperonin CPN60-like 1 [Arabidopsis thaliana]	70%
RefSeq	Populus trichocarpa	XP_002303091.1	predicted protein [Populus trichocarpa]	70%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NV22

Fln msg: Distance to subject end: 21 aas, your sequence is shorter than subject: 161 - 617

Fln protein: KERLGKLSGGVAVLKVGGASEVEVGEKKDRITDALNATRAAVEEGIVPGGGVALLQASKTLDKLLADSSLTFDQRQGVEIIINALRIPCKTIADNAGFEGAVVVGKLLESTDNKWGFDAHEGKYRNLVEAGIIDPTKVVRTALVDASSVAGLLTTTEAVIV

Protein Length: 162

Fln nts: CAAGGAGCGTCTCGGAAAGTTGTCAGGAGGAGTTGCTGTTCTCAAGGTCGGAGGTGCTAGCGAAGTTGAAGTCGGAGAAAAGAAGGATAGAATTACTGACGCTCTCAACGCAACAAGAGCCGCTGTAGAAGAAGGTATCGTTCCCGGAGGAGGTGTTGCCTTGCTCCAAGCTTCCAAGACCCTTGACAAGTTGTTGGCCGATTCTTCTCTCACATTCGATCAACGCCAAGGAGTTGAAATCATCATCAACGCTCTCCGAATTCCATGCAAGACTATTGCTGACAATGCTGGATTTGAAGGTGCTGTCGTCGTTGGAAAGCTGTTGGAATCCACTGATAACAAGTGGGGATTTGATGCCCACGAAGGCAAATACCGCAACTTGGTTGAGGCTGGTATCATCGATCCAACCAAGGTCGTACGCACAGCTCTCGTTGATGCCTCAAGTGTTGCTGGTCTCTTGACCACCACCGAAGCTGTCATCGTTG

Fln Alignment:

HLKU4M004IKUQX___ERLGKLSGGVAVLKVGGASEVEVGEKKDRITDALNATRAAVEEGIVPGGGVALLQASKTLDKLLADSSLTFDQRQGVEIIINALRIPCKTIADNAGFEGAVVVGKLLESTDNKWGFDAHEGKYRNLVEAGIIDPTKVVRTALVDASSVAGLLTTTEAVIV
A9NV22________________ERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCALLRLASKVDAI-RDTLENDEQKVGAGIVKRALSYPLKLIAKNAGVNGSVVVEKVLSSDDPKYGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTSDVVVV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain