SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene153337

Length: 230 nt

UniGene Fasta

>sp_v3.0_unigene153337
ATGAACATGTATGTATCCAACCTGGGTTTTCAACTGCAGGAATCAGATTTGAATCAATTATTCAGTGTATTTGGCGAAGTAGCTTCTGCCAAAATCATCAAAGACCGCGAAACCGGTCGTAGCCGCGGCTTTGGCTTTGTAGAAATGCCCTCTGCCGATCAGGCCAACTCTGCCATGCAGGCATTAAACAACCGCGAGATCAGCGGAAGAGCCATGTCTGTATCCGTTGC

Ace file of the UniGene sp_v3.0_unigene153337

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RNP-1 like RNA-binding protein n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PG91_CHIPD	-	-	2.0e-19	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	44%

Source	GOs	Term	Type	e value	Identity
Sma3	nucleotide binding	GO:0000166	Molecular Function	0.0	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	RNA recognition motif domain	IPR000504	-	0.0	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G24770.1	RBP31, ATRBP31, CP31, ATRBP33 31-kDa RNA binding protein chr4:12766223-12767952 REVERSE LENGTH=329	4.0e-18	48%
RefSeq	Arabidopsis thaliana	NP_194208.1	ribonucleoprotein [Arabidopsis thaliana]	5.0e-18	48%
RefSeq	Populus trichocarpa	XP_002298568.1	predicted protein [Populus trichocarpa]	2.0e-18	47%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NQT3

Fln msg: Distance to subject end: 42 aas, your sequence is shorter than subject: 76 - 157

Fln protein: MNMYVSNLGFQLQESDLNQLFSVFGEVASAKIIKDRETGRSRGFGFVEMPSADQANSAMQALNNREISGRAMSVSV

Protein Length: 77

Fln nts: ATGAACATGTATGTATCCAACCTGGGTTTTCAACTGCAGGAATCAGATTTGAATCAATTATTCAGTGTATTTGGCGAAGTAGCTTCTGCCAAAATCATCAAAGACCGCGAAACCGGTCGTAGCCGCGGCTTTGGCTTTGTAGAAATGCCCTCTGCCGATCAGGCCAACTCTGCCATGCAGGCATTAAACAACCGCGAGATCAGCGGAAGAGCCATGTCTGTATCCGTTGC

Fln Alignment:

HLKU4M004JJVFD___MYVSNLGFQLQESDLNQLFSVFGEVASAKIIKDRETGRSRGFGFVEMPSADQANSAMQALNNREISGRAMSVSV
A9NQT3________________VFVGGLSYGVDDQTLRESFATFGDVMEAKIINDRETGRSRGFGFVTFASPDEANAAVEAMDGKDLQGRSIRVNI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain