SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene153324

Length: 428 nt

UniGene Fasta

>sp_v3.0_unigene153324
AGGGAAGGTTCCCACAAAAGATGTCGACGACCAATTGTTGAAACTCCAACAAAAAAGTACCGACATGTTTGTGGATTGGATTCCAAACAACATCAAATCATCCATCTGTAATATTGCTCCTCCTGGTCTCCCAATGTCCGCTACTTTTGTTGGAAATTCGACTTCAATTCAAGATATGTTCAAGCGTGTGAGCGAACAATTCTCTGCGATGTTCAGGCGCAAGGCTTTCTTGCATTGGTACACAAGTGAAGGCATGGATGAAATGGAGTTGACTGAAGCTGAAAGCAATATCAATGATCTTGTTAGTGAGTATCAGCAACATGAAGCGGCTGTTGCAGATGAAGATCATCACGATTCTTTGGTAGAAGGAGAGAGTGTCGTCGACGAACAACCCTCCCATTTGGAGGAACCACAAGAAGTCGAATTTT

Ace file of the UniGene sp_v3.0_unigene153324

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Beta-tubulin n=2 Tax=Capsaspora owczarzaki ATCC 30864 RepID=E9C6T6_9EUKA	-	-	0.0	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%
Sma3	Beta-tubulin	-	-	5.508e-09	-

Source	Gene names
Sma3	AT4G20890; At1g20010; At1g75780/T4O12_29; At2g29550; At5g12250; At5g12250/MXC9_21; At5g23860; At5g62690; BTub-1; BTub1; F16P2.7; GSVIVT00000394001; GSVIVT00000417001; GSVIVT00009147001; GSVIVT00014415001; GSVIVT00017326001; GSVIVT00017820001; GSVIVT000214

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	microtubule	GO:0005874	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	nucleomorph	GO:0033009	Cellular Component	-
Sma3	protein complex	GO:0043234	Cellular Component	-
Sma3	GTPase activity	GO:0003924	Molecular Function	-
Sma3	structural molecule activity	GO:0005198	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	microtubule-based movement	GO:0007018	Biological Process	-
Sma3	protein polymerization	GO:0051258	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Tubulin	IPR000217	-	-
Sma3	Beta tubulin	IPR002453	-	-
Sma3	Tubulin/FtsZ, GTPase domain	IPR003008	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-
Sma3	Tubulin/FtsZ, 2-layer sandwich domain	IPR018316	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G23860.1	TUB8 tubulin beta 8 chr5:8042962-8044528 FORWARD LENGTH=449	64%
RefSeq	Arabidopsis thaliana	NP_001190373.1	tubulin beta-8 chain [Arabidopsis thaliana]	64%
RefSeq	Populus trichocarpa	XP_002309109.1	tubulin, beta chain [Populus trichocarpa]	69%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PT51

Fln msg: STOP codon was not found. Distance to subject end: 16 aas, your sequence is shorter than subject: 142 - 444

Fln protein: GKVPTKDVDDQLLKLQQKSTDMFVDWIPNNIKSSICNIAPPGLPMSATFVGNSTSIQDMFKRVSEQFSAMFRRKAFLHWYTSEGMDEMELTEAESNINDLVSEYQQHEAAVADEDHHDSLVEGESVVDEQPSHLEEPQEVEF

Protein Length: 143

Fln nts: AGGGAAGGTTCCCACAAAAGATGTCGACGACCAATTGTTGAAACTCCAACAAAAAAGTACCGACATGTTTGTGGATTGGATTCCAAACAACATCAAATCATCCATCTGTAATATTGCTCCTCCTGGTCTCCCAATGTCCGCTACTTTTGTTGGAAATTCGACTTCAATTCAAGATATGTTCAAGCGTGTGAGCGAACAATTCTCTGCGATGTTCAGGCGCAAGGCTTTCTTGCATTGGTACACAAGTGAAGGCATGGATGAAATGGAGTTGACTGAAGCTGAAAGCAATATCAATGATCTTGTTAGTGAGTATCAGCAACATGAAGCGGCTGTTGCAGATGAAGATCATCACGATTCTTTGGTAGAAGGAGAGAGTGTCGTCGACGAACAACCCTCCCATTTGGAGGAACCACAAGAAGTCGAATTTT

Fln Alignment:

HLKU4M004H8CW8___GKVPTKDVDDQLLKLQQKSTDMFVDWIPNNIKSSICNIAPPGLPMSATFVGNSTSIQDMFKRVSEQFSAMFRRKAFLHWYTSEGMDEMELTEAESNINDLVSEYQQHEAAVADEDHHD
C0PT51________________GKMSTKEVDEQMINVQNKNSSYFVEWIPHNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAENDDYE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain