SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene153245

Length: 245 nt

UniGene Fasta

>sp_v3.0_unigene153245
TGACCCTCGACGTATGGGAGCACGCCTACTATCTGGATTACCAAAACGCCCGCCCTGATTTTATCAAGGCGTACCTCACTAATCTCGTCAACTGGGAGTTCGCGGAGCAGAACCTGAATGCTGCCCACAAAATGTAAGGCTCGACATCACGCGTCGACGGAGTCGTGCTTATTTGCTACGAGATCTTCGACCGGAGCTCGAGCTCCTTCGAAATCGAACAGTAAGAGCCGGTTGTAAACCAGCGT

Ace file of the UniGene sp_v3.0_unigene153245

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Superoxide dismutase n=1 Tax=Asticcacaulis excentricus CB 48 RepID=E8RSS4_9CAUL	-	-	6.0e-12	77%
FL-Next	sp=Superoxide dismutase; Pinus pinaster (Maritime pine).	-	-	0.0	56%

Source	GOs	Term	Type	Identity
Sma3	superoxide dismutase activity	GO:0004784	Molecular Function	-
Sma3	metal ion binding	GO:0046872	Molecular Function	-
Sma3	superoxide metabolic process	GO:0006801	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Manganese/iron superoxide dismutase	IPR001189	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G25100.1	FSD1, ATFSD1 Fe superoxide dismutase 1 chr4:12884649-12886501 REVERSE LENGTH=212	6.0e-15	65%
RefSeq	Arabidopsis thaliana	NP_001031710.1	Superoxide dismutase [Fe] [Arabidopsis thaliana]	7.0e-15	65%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q6QJL0

Fln msg: your sequence is shorter than subject: 45 - 249

Fln protein: TLDVWEHAYYLDYQNARPDFIKAYLTNLVNWEFAEQNLNAAHKM*

Protein Length: 46

Fln nts: TGACCCTCGACGTATGGGAGCACGCCTACTATCTGGATTACCAAAACGCCCGCCCTGATTTTATCAAGGCGTACCTCACTAATCTCGTCAACTGGGAGTTCGCGGAGCAGAACCTGAATGCTGCCCACAAAATGTAA___GGCTCGACATCACGCGTCGACGGAGTCGTGCTTATTTGCTACGAGATCTTCGACCGGAGCTCGAGCTCCTTCGAAATCGAACAGTAAGAGCCGGTTGTAAACCAGCGT

Fln Alignment:

HLKU4M004JXNJE___TLDVWEHAYYLDYQNARPDFIKAYLTNLVNWEFAEQNLNAA
Q6QJL0________________TIDVWEHAYYLDYQNRRPDYISTFMNELVSWDAVNARLDRA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain