SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene153233

Length: 537 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene153233
GGCTTCGATTTCAGCCTGAGCAAGCGCAATGTCACGTTAGGTGGCTCGATGGCCAAGCCTCCCAAGGCCTTCAAGACGGGCACCACCATTTGTGGTCTTTTGTACAATGATGGTGTTATTCTGGGCGCAGACACACGTGCCACCGAAGGCTCTATTGTGTGTGACAAAAACTGCGAGAAGATTCATCACATCTCCAAAAATATCTGGTGCTGCGGTGCCGGTACGTCCGCCGATACGGAAAACACAACCGCTTTGATTGCGTCGCAATTGGAGCTGCACCGTTTGGAGACAGGCACCGAGCCCCGTGTTATTACGGCACTCACACGTCTGAAGCAGCGTCTTTTCCAGTATCAAGGGCACGTCTCAGCTGCCCTGGTCCTGGGTGGTGTGGACCCCACCGGCGCTCACCTTTACATGGTTCATCCTCACGGCTCTGCCGATCGTCTGCCTTACGCAACGATGGGTTCTGGTTCGCTGGCCGCCATGGCTGTTTTTGAAAACCGCTACAAAGACAACCTCGACGAGAAGGAAGGTATC

Ace file of the UniGene sp_v3.0_unigene153233 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Proteasome subunit beta type n=6 Tax=melanogaster group RepID=Q9VUJ1_DROME	-	-	0.0	70%
FL-Next	sp=Proteasome subunit beta type; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%

Source	Gene names
Sma3	AT3G27430; At2g14490; At3g27430; At5g40580; CHLREDRAFT_186317; GSVIVT00030725001; K1G2.15; MICPUCDRAFT_27663; MICPUN_107407; MNF13.10; MtrDRAFT_AC150800g35v2; OJ1097_A12.2; Os05g0187000; OsI_18743; OsJ_17385; OsPBB1; Ot02g04420; PBB1; PBB2; PHATRDRAFT_531

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	proteasome core complex	GO:0005839	Cellular Component	-
Sma3	threonine-type endopeptidase activity	GO:0004298	Molecular Function	-
Sma3	ARF GTPase activator activity	GO:0008060	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-
Sma3	regulation of ARF GTPase activity	GO:0032312	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase T1A, proteasome beta-subunit	IPR000243	-	-
Sma3	Arf GTPase activating protein	IPR001164	-	-
Sma3	Proteasome, subunit alpha/beta	IPR001353	-	-
Sma3	Proteasome, beta-type subunit, conserved site	IPR016050	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G27430.2	PBB1 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein chr3:10152910-10155052 FORWARD LENGTH=273	67%
RefSeq	Arabidopsis thaliana	NP_850641.1	proteasome subunit beta type-7-A [Arabidopsis thaliana]	67%
RefSeq	Populus trichocarpa	XP_002323800.1	predicted protein [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NYV8

Fln msg: Distance to subject end: 82 aas, atg_distance in limit (1-15): atg_distance = 13, W2: There is no M at the beginning, your sequence is shorter than subject: 179 - 273

Fln protein: GFDFSLSKRNVTLGGSMAKPPKAFKTGTTICGLLYNDGVILGADTRATEGSIVCDKNCEKIHHISKNIWCCGAGTSADTENTTALIASQLELHRLETGTEPRVITALTRLKQRLFQYQGHVSAALVLGGVDPTGAHLYMVHPHGSADRLPYATMGSGSLAAMAVFENRYKDNLDEKEGI

Protein Length: 180

Fln nts: GGCTTCGATTTCAGCCTGAGCAAGCGCAATGTCACGTTAGGTGGCTCGATGGCCAAGCCTCCCAAGGCCTTCAAGACGGGCACCACCATTTGTGGTCTTTTGTACAATGATGGTGTTATTCTGGGCGCAGACACACGTGCCACCGAAGGCTCTATTGTGTGTGACAAAAACTGCGAGAAGATTCATCACATCTCCAAAAATATCTGGTGCTGCGGTGCCGGTACGTCCGCCGATACGGAAAACACAACCGCTTTGATTGCGTCGCAATTGGAGCTGCACCGTTTGGAGACAGGCACCGAGCCCCGTGTTATTACGGCACTCACACGTCTGAAGCAGCGTCTTTTCCAGTATCAAGGGCACGTCTCAGCTGCCCTGGTCCTGGGTGGTGTGGACCCCACCGGCGCTCACCTTTACATGGTTCATCCTCACGGCTCTGCCGATCGTCTGCCTTACGCAACGATGGGTTCTGGTTCGCTGGCCGCCATGGCTGTTTTTGAAAACCGCTACAAAGACAACCTCGACGAGAAGGAAGGTATC

Fln Alignment:

HLKU4M004I022N___GFDFSLSKRNVTLGGSMAKPPKAFKTGTTICGLLYNDGVILGADTRATEGSIVCDKNCEKIHHISKNIWCCGAGTSADTENTTALIASQLELHRLETGTEPRVITALTRLKQRLFQYQGHVSAALVLGGVDPTGAHLYMVHPHGSADRLPYATMGSGSLAAMAVFENRYKDNLDEKEGI
A9NYV8________________GFSFDLCRRNEMLAKKGVQSPSFRKTGTTIVGLVFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLELHRYATGRESRVVTALTLLKSHLYSYQGHVSAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESRYREGMTREEGI

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain