SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene153227

Length: 427 nt

UniGene Fasta

>sp_v3.0_unigene153227
CGCCATGGGTGGCATCTACGGAGTGCTGACCCGCCGCCGTGGTATTATCATCGGCGAGGAGAACCGCCCCGGCACGCCCATCTACAACGTCCGCGCGTACCTGCCCGTCGCCGAGTCCTTCGGCTTCACGGCCGACCTCCGCGCCGCCATCGCCGGCCAGGCCTTCCCCCAGTGTGTCTTCGACCACTGGCAGCTCTTCCCCGGAGACCCGCTCGAGTCCAAGACCCTCGCCAACGACCAGGCGCTCAAGATCCGCGTCCGCAAGGGCCTCAAGCCCGAGATCCCCGCGCTGGACTCCTTCATGGACAAGTTGTAGGCGACCCATGACGCTTTGCACCCGCGAAGTCGGCACCGTTTTTTCGGTCTGCGACAGCTCGGACGATGGTGAACTCTGTGAAAGGAAACCCAATAACGTAAGACTTGTTAA

Ace file of the UniGene sp_v3.0_unigene153227

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Elongation factor 2 n=1 Tax=Leishmania braziliensis RepID=A4HNM5_LEIBR	-	-	8.0e-40	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%
Sma3	Elongation factor 2	-	-	1.38869e-42	-

Source	ECs	Term	Type	e value	Identity
Sma3	Protein-synthesizing GTPase.	EC:3.6.5.3	-	1.131e-06	-

Source	Gene names
Sma3	AT1G56070; At1g56070; At1g56070/T6H22.13; At1g56075; CHLREDRAFT_24524; EEF2; EF-2; EF2; EFG2; GSVIVT00025739001; H0613H07.5; MICPUCDRAFT_27460; MICPUN_112653; OSJNBa0020P07.3; OSTLU_52010; Os01g0723000; Os01g0742200; Os02g0519900; Os04g0118400; OsI_03568;

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	translation elongation factor activity	GO:0003746	Molecular Function	-
Sma3	GTPase activity	GO:0003924	Molecular Function	-
Sma3	copper ion binding	GO:0005507	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Translation elongation factor EFG/EF2, C-terminal	IPR000640	-	-
Sma3	Protein synthesis factor, GTP-binding	IPR000795	-	-
Sma3	Translation elongation factor EFTu/EF1A, domain 2	IPR004161	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3	Translation elongation factor EFG/EF2, domain IV	IPR005517	-	-
Sma3	Ribosomal protein S5 domain 2-type fold, subgroup	IPR014721	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G56070.1	LOS1 Ribosomal protein S5/Elongation factor G/III/V family protein chr1:20968245-20971077 REVERSE LENGTH=843	1.0e-31	58%
RefSeq	Arabidopsis thaliana	NP_849818.1	elongation factor EF-2 [Arabidopsis thaliana]	1.0e-31	58%
RefSeq	Populus trichocarpa	XP_002336546.1	predicted protein [Populus trichocarpa]	4.0e-34	57%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ACX5

Fln msg: your sequence is shorter than subject: 105 - 267

Fln protein: AMGGIYGVLTRRRGIIIGEENRPGTPIYNVRAYLPVAESFGFTADLRAAIAGQAFPQCVFDHWQLFPGDPLESKTLANDQALKIRVRKGLKPEIPALDSFMDKL*

Protein Length: 106

Fln nts: CGCCATGGGTGGCATCTACGGAGTGCTGACCCGCCGCCGTGGTATTATCATCGGCGAGGAGAACCGCCCCGGCACGCCCATCTACAACGTCCGCGCGTACCTGCCCGTCGCCGAGTCCTTCGGCTTCACGGCCGACCTCCGCGCCGCCATCGCCGGCCAGGCCTTCCCCCAGTGTGTCTTCGACCACTGGCAGCTCTTCCCCGGAGACCCGCTCGAGTCCAAGACCCTCGCCAACGACCAGGCGCTCAAGATCCGCGTCCGCAAGGGCCTCAAGCCCGAGATCCCCGCGCTGGACTCCTTCATGGACAAGTTGTAG___GCGACCCATGACGCTTTGCACCCGCGAAGTCGGCACCGTTTTTTCGGTCTGCGACAGCTCGGACGATGGTGAACTCTGTGAAAGGAAACCCAATAACGTAAGACTTGTTAA

Fln Alignment:

HLKU4M004II1PL___AMGGIYGVLTXXXXXXXXXXNRPGTPIYNVRAYLPVAESFGFTADLRAAIAGQAFPQCVFDHWQLFPGDPLESKTLANDQALKIRVRKGLKPEIPALDSFMDKL
D5ACX5________________ALGGIYGVLNQKRGHVFEEMQRQGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMGSDPLETGSQAGQLVTDIRKRKGLKESMTPLSDFEDKL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain