SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene153177

Length: 243 nt

UniGene Fasta

>sp_v3.0_unigene153177
GATCGTATTTCTTGACGAGCCAACCACGGGTATGGACCCTGTAAGCAGAAGAAAAGTCTGGAATACCATCGAACGAGCCAAGAAGAACAAAGTCATTGTGCTGACCACTCACTCTATGGAGGAAGCTGATGTACTTGGTGACAAGATTGCTATCATGGCGAGAGGAAGACTTCAGTGCATTGGAAGTTCTTTGAGACTTAAGCAGAGATTTGGAGCTGGATATCGTGTGGCTGTGGGTACTGA

Ace file of the UniGene sp_v3.0_unigene153177

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ABC transporter A family member 9 [Arabidopsis thaliana] gb\|AED97510.1\| ABC transporter A family member 9 [Arabidopsis thaliana]	-	-	5.0e-25	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	73%
Sma3	ABC transporter family, retinal flippase subfamily	-	-	1.547e-07	-

Source	ECs	Term	Type	e value	Identity
Sma3		EC:3.6.3.3-	-	3.09e-06	-

Source	Gene names
Sma3	ATH1; ATH11; ATH15; ATH16; ATH5; ATH6; At2g41700; At3g47730; At3g47770; At3g47780; At5g61690; At5g61700; At5g61730; CHLREDRAFT_121110; GSVIVT00000113001; GSVIVT00000115001; GSVIVT00025613001; K11J9.22; K11J9.23; MAC9.1; MAC9.4; MICPUCDRAFT_60664; MICPUN_5

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G61730.1	ATATH11, ATH11 ABC2 homolog 11 chr5:24803583-24807898 REVERSE LENGTH=940	4.0e-31	65%
RefSeq	Arabidopsis thaliana	NP_200981.1	ABC transporter A family member 9 [Arabidopsis thaliana]	5.0e-31	65%
RefSeq	Populus trichocarpa	XP_002317988.1	ABC transporter family, retinal flippase subfamily [Populus trichocarpa]	1.0e-30	68%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PRA1

Fln msg: Distance to subject end: 216 aas, your sequence is shorter than subject: 80 - 788

Fln protein: IVFLDEPTTGMDPVSRRKVWNTIERAKKNKVIVLTTHSMEEADVLGDKIAIMARGRLQCIGSSLRLKQRFGAGYRVAVGT

Protein Length: 81

Fln nts: GATCGTATTTCTTGACGAGCCAACCACGGGTATGGACCCTGTAAGCAGAAGAAAAGTCTGGAATACCATCGAACGAGCCAAGAAGAACAAAGTCATTGTGCTGACCACTCACTCTATGGAGGAAGCTGATGTACTTGGTGACAAGATTGCTATCATGGCGAGAGGAAGACTTCAGTGCATTGGAAGTTCTTTGAGACTTAAGCAGAGATTTGGAGCTGGATATCGTGTGGCTGTGGGTACTGA

Fln Alignment:

HLKU4M004I4XU6___IVFLDEPTTGMDPVSRRKVWNTIERAKKNKVIVLTTHSMEEADVLGDKIAIMARGRLQCIGSSLRLKQRFGAGYRVAV
C0PRA1________________LVFLDEPTTGMDPVTRRYVWDIIEDAKKGRAIVLTTHSMEEADILSDRIAIMARGKLRCIGTSVRLKSRFGTGFVVNV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain