SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene153035

Length: 204 nt

UniGene Fasta

>sp_v3.0_unigene153035
GAAGATGAAGAAATTCGACGATGGTCTCCCAGAGAGAAGGTTCGATAACTTCCAATTCGTTGAGTTCCACAAGGTGGTGAACAAATACTCTGAGAACCCAAACATGGCTTTCCGAATCGAAGCACTCATGGAGATACCAGAACAATACAAGGCCTGTGTCAAATTGGGGTACTTGGATCGTAGGGATGGTATCACAATCCCCAA

Ace file of the UniGene sp_v3.0_unigene153035

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	copine-like protein [Oryza sativa Japonica Group]	-	-	2.0e-11	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	46%

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G14420.1	RGLG2 RING domain ligase2 chr5:4648355-4650563 REVERSE LENGTH=468	3.0e-14	50%
RefSeq	Arabidopsis thaliana	NP_196946.1	E3 ubiquitin-protein ligase RGLG2 [Arabidopsis thaliana]	4.0e-14	50%
RefSeq	Populus trichocarpa	XP_002316157.1	predicted protein [Populus trichocarpa]	3.0e-13	51%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUP8

Fln msg: Distance to subject end: 97 aas, your sequence is shorter than subject: 67 - 423

Fln protein: KMKKFDDGLPERRFDNFQFVEFHKVVNKYSENPNMAFRIEALMEIPEQYKACVKLGYLDRRDGITIP

Protein Length: 68

Fln nts: GAAGATGAAGAAATTCGACGATGGTCTCCCAGAGAGAAGGTTCGATAACTTCCAATTCGTTGAGTTCCACAAGGTGGTGAACAAATACTCTGAGAACCCAAACATGGCTTTCCGAATCGAAGCACTCATGGAGATACCAGAACAATACAAGGCCTGTGTCAAATTGGGGTACTTGGATCGTAGGGATGGTATCACAATCCCCAA

Fln Alignment:

HLKU4M004IOZA8___MKKFDDGLPERRFDNFQFVEFHKVVNKY--SENPNMAFRIEALMEIPEQYKACVKLGYLDRRDG
A9NUP8________________MRQFDDNIPARAFDNFQFVNFTEIMSKNVPQSRKETEFALASLMEIPSQYKATLDLQILGRRRG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain