SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene153005

Length: 165 nt

UniGene Fasta

>sp_v3.0_unigene153005
GTTATGGAACTGAGAACGGCACTGACTTCTGGAGAATTAAAAATACATGGGGATCTGCTTGGGGAGAAAATGGCTACTTCAGACTCGAAAGAAGCAACGGAGCTTGTGGGCTTTATTCTATCGCGAGCTACCCTACTAATTAGGCAGCGTAAGTAAGTTCATATT

Ace file of the UniGene sp_v3.0_unigene153005

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cysteine protease Cp4 n=1 Tax=Actinidia deliciosa RepID=A5HIJ4_ACTDE	-	-	1.0e-11	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G19390.1	Granulin repeat cysteine protease family protein chr3:6723024-6724768 FORWARD LENGTH=452	4.0e-15	57%
RefSeq	Arabidopsis thaliana	NP_566633.1	Granulin repeat cysteine protease family protein [Arabidopsis thaliana]	5.0e-15	57%
RefSeq	Populus trichocarpa	XP_002313136.1	predicted protein [Populus trichocarpa]	1.0e-15	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NV34

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 98 aas, your sequence is shorter than subject: 47 - 452

Fln protein: YGTENGTDFWRIKNTWGSAWGENGYFRLERSNGACGLYSIASYPTN*

Protein Length: 48

Fln nts: GTTATGGAACTGAGAACGGCACTGACTTCTGGAGAATTAAAAATACATGGGGATCTGCTTGGGGAGAAAATGGCTACTTCAGACTCGAAAGAAGCAACGGAGCTTGTGGGCTTTATTCTATCGCGAGCTACCCTACTAATTAGGCAGCGTAAGTAAGTTCATATT

Fln Alignment:

HLKU4M004IPR86___YGTENGTDFWRIKNTWGSAWGENGYFRLER-----SNGACGLYSIASYP
A9NV34________________YGSESGTDYWTVKNSWGKSWGEEGFIRLQRNIEVASTGMCGIAMEASYP

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain