SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene152954

Length: 351 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene152954
GAAATTTTGGAAAAGGGATTAAAAGTCAAAGAATTTGAGCTGAGATCAAATAACTTCAGCGACACCGGTAACTTCGGTTTTGGTATCGATGAACATATTGATTTGGGAATCAAATACGATCCTCAAATCGGAATTTACGGTATGGACTTTTATGTGGTCCTCTCTCGTCCCGGCCTTCGAGTTTCTAGGAGAAGAAGATGTCAAAACAGAGTTGGACCCCATCACAGAGTGTCGAAAAATGAAGCTATTAAGTGGTTCGAGACAACTTTTGAGGGTACTGTTCTTGGCAAAAAAATTGAGAAGAATTGAGATTCCTTCTTCGAGTAAAGCTGATTTTGATTCATAATTTAT

Ace file of the UniGene sp_v3.0_unigene152954 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ribosomal protein L11 (Fragment) n=1 Tax=Crassostrea gigas RepID=Q70MM1_CRAGI	-	-	2.0e-27	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	67%
Sma3	Ribosomal protein L11	-	-	3.69e-11	-

Source	Gene names
Sma3	At2g42740; At3g58700; At4g18730; At5g45775; CHLREDRAFT_195587; F28A21.140; GSVIVT00018776001; GSVIVT00035844001; L16; MICPUCDRAFT_24004; MICPUN_89807; MRA19.26; MRA19_21; OJ1077_A12.6; OSTLU_30777; Os01g0205500; Os02g0235600; Os06g0550000; OsI_00826; OsI_

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	rRNA binding	GO:0019843	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L5	IPR002132	-	0.0	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G45775.2	Ribosomal L5P family protein chr5:18565281-18566496 REVERSE LENGTH=182	3.0e-32	70%
RefSeq	Arabidopsis thaliana	NP_851137.1	60S ribosomal protein L11-2 [Arabidopsis thaliana]	3.0e-32	70%
RefSeq	Populus trichocarpa	XP_002309361.1	predicted protein [Populus trichocarpa]	3.0e-32	70%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NPD1

Fln msg: your sequence is shorter than subject: 103 - 180

Fln protein: EILEKGLKVKEFELRSNNFSDTGNFGFGIDEHIDLGIKYDPQIGIYGMDFYVVLSRPGLRVSRRRRCQNRVGPHHRVSKNEAIKWFETTFEGTVLGKKIEKN*

Protein Length: 104

Fln nts: GAAATTTTGGAAAAGGGATTAAAAGTCAAAGAATTTGAGCTGAGATCAAATAACTTCAGCGACACCGGTAACTTCGGTTTTGGTATCGATGAACATATTGATTTGGGAATCAAATACGATCCTCAAATCGGAATTTACGGTATGGACTTTTATGTGGTCCTCTCTCGTCCCGGCCTTCGAGTTTCTAGGAGAAGAAGATGTCAAAACAGAGTTGGACCCCATCACAGAGTGTCGAAAAATGAAGCTATTAAGTGGTTCGAGACAACTTTTGAGGGTACTGTTCTTGGCAAAAAAATTGAGAAGAATTGA___GATTCCTTCTTCGAGTAAAGCTGATTTTGATTCATAATTTAT

Fln Alignment:

HLKU4M004H5F3A___EILEKGLKVKEFELRSNNFSDTGNFGFGIDEHIDLGIKYDPQIGIYGMDFYXXXXXXXXXXXXXXXXXXRVGPHHRVSKNEAIKWFETTFEGTVLGK
A9NPD1________________QLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRIGRRKRAQSRVGIQHRVTKDDAMKWFQVKYEGVILNK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain