SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene152944

Length: 439 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene152944
ATCATTTTGTACGGACAGAGCATCGGCACAGTACCCACGATTGATCTGGCGTCGCGAGAGCAGCCCGGCGGCGTGATCCTGCACTCGCCGCTGTCATCTGGCCTGCGCGTTCTGCGGCCGCGGCTGCAGCGTACCTGGTGCTGCGATCCATTCCCCAGCATCAAGAAGATGGGGCGGGTCAAGTCGCCAGTATTATTTATCCACGGAACCAAGGACGAGGTTATTGACATTTCGCACAGCCGCGCGCTGCTGGACAGCTGCCAGAACGCAGTGGATCCGCTGTGGGTTGAGGGGGCCGGGCACAACGATGTGGAGATGTACACCGAGTACCCGGATCGGCTGGCGCTGTTTGTTGCGGGTCTGGCGTCGCTGGAGCGCTGAACTTGGTAAGTGAGAGAGGTTGGGTGATGTTGCAGAGTAAAGCGACCGTCGTAACTAG

Ace file of the UniGene sp_v3.0_unigene152944 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG1073 Hydrolases of the alpha/beta superfamily	-	-	2.0e-13	35%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%
Sma3	Esterase/lipase/thioesterase	-	-	1.186e-12	-

Source	Gene names
Sma3	AT4g24760; At3g01690; At4g24760; At4g31020; At5g14390; At5g38220; CHLREDRAFT_106548; F18O22_180; F22K18.40; F28J7.1; F4P13.23; GSVIVT00007993001; GSVIVT00011539001; GSVIVT00015930001; GSVIVT00020607001; GSVIVT00038105001; GSVIVT00038262001; LOC_Os12g18860

Source	GOs	Term	Type	e value	Identity
Sma3	peptidase activity	GO:0008233	Molecular Function	0.0	-
Sma3	hydrolase activity	GO:0016787	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Alpha/beta hydrolase fold-1	IPR000073	-	-
Sma3	Thionin	IPR001010	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Phospholipase/carboxylesterase/thioesterase	IPR003140	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G38220.1	alpha/beta-Hydrolases superfamily protein chr5:15269012-15271140 FORWARD LENGTH=336	1.0e-31	48%
RefSeq	Arabidopsis thaliana	NP_198638.2	hydrolase [Arabidopsis thaliana]	2.0e-31	48%
RefSeq	Populus trichocarpa	XP_002305827.1	predicted protein [Populus trichocarpa]	5.0e-33	47%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NV43

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 98 aas, your sequence is shorter than subject: 127 - 384

Fln protein: IILYGQSIGTVPTIDLASREQPGGVILHSPLSSGLRVLRPRLQRTWCCDPFPSIKKMGRVKSPVLFIHGTKDEVIDISHSRALLDSCQNAVDPLWVEGAGHNDVEMYTEYPDRLALFVAGLASLER*

Protein Length: 128

Fln nts: ATCATTTTGTACGGACAGAGCATCGGCACAGTACCCACGATTGATCTGGCGTCGCGAGAGCAGCCCGGCGGCGTGATCCTGCACTCGCCGCTGTCATCTGGCCTGCGCGTTCTGCGGCCGCGGCTGCAGCGTACCTGGTGCTGCGATCCATTCCCCAGCATCAAGAAGATGGGGCGGGTCAAGTCGCCAGTATTATTTATCCACGGAACCAAGGACGAGGTTATTGACATTTCGCACAGCCGCGCGCTGCTGGACAGCTGCCAGAACGCAGTGGATCCGCTGTGGGTTGAGGGGGCCGGGCACAACGATGTGGAGATGTACACCGAGTACCCGGATCGGCTGGCGCTGTTTGTTGCGGGTCTGGCGTCGCTGGAGCGCTGAACTTGGTAAGTGAGAGAGGTTGGGTGATGTTGCAGAGTAAAGCGACCGTCGTAACTAG

Fln Alignment:

HLKU4M004H8YXO___IILYGQSIGTVPTIDLASR-EQPGGVILHSPLSSGLRVLRPRLQRTWCCDPFPSIKKMGRVKSPVLFIHGTKDEVIDISHSRALLDSCQNAVDPLWVEGAGHNDVEMYTEYPDRLALFVA
A9NV43________________IILYGQSVGSGPTLDLAARLPSLRAVVLHSAILSGLRVMYP-VKRTYWFDIYKNIDKMPLVNCPVLIIHGTSDEVVDCSHGKQLWDLCKEKYEPLWLKGGSHCNLELYPDYIRHLRKFIS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain