SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene152895

Length: 493 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene152895
CAAGTCGGTAATGGTACCGCTGTTCCAGCAGCTGGCTCGTACTATCGGTAGTCCGCATTTCCAAGTGGCCGAGAGGGCATTGTTTATGTGGCACAATGAGTACATCGCAAGTTTGGTGGCGGATCACCGTGACGTGATCTTGCCGATCATCTACCCAGTTCTGCACGAGAACTCGCAACACCATTGGAATCCAACGGTGAACAACTTGACGGTCAACGTGCTCAAGATTTTCATGGAGATGGATTCGGAGCTGGTGCAGGAGTGCACCAAGAAGCATGCCGAGAAGCAAAAGAAGAAGGAGGTGGACAAGAAACTGAGGGCCGAGGCGTGGAGCCGGCTTTCAGAGGTCGCTCAAAAAGTGCAGACGGAACAGCACATGCCACCCCCGGTGATTCCCAATCATGCCCAAACCGCGCCTCCACGTGAAATGGATGGTGTGTAGCCTAGCTCATCTTGTGTACGGTGTTAAGTAAATAGCGAGTATATTATCTAT

Ace file of the UniGene sp_v3.0_unigene152895 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	serine/threonine protein phosphatase 2A regulatory subunit B prime beta isoform [Arabidopsis thaliana] sp\|O04376.1\|2A5B_ARATH RecName: Full=Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform; Short=AtB' beta; Short=PP2A, B'	-	-	3.0e-22	47%
FL-Next	sp=Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	56%
Sma3	Protein phosphatase 2a, regulatory subunit, putative	-	-	1.072e-14	-

Source	Gene names
Sma3	AT3G26020; At1g13460; At3g09880; At3g26020; At3g54930; At5g03470; B'ALPHA; B'BETA; B'EPSILON; B'ETA; B'THETA; B'kappa; B'zeta; B1029H08.25; CHLREDRAFT_127638; F12E4.240; F28P10.90; F8A24.7; GSVIVT00020577001; GSVIVT00025928001; GSVIVT00035107001; H0805A05

Source	GOs	Term	Type	Identity
Sma3	protein phosphatase type 2A complex	GO:0000159	Cellular Component	-
Sma3	protein phosphatase type 2A regulator activity	GO:0008601	Molecular Function	-
Sma3	signal transduction	GO:0007165	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycoside hydrolase, chitinase active site	IPR001579	-	0.0	-
Sma3	Protein phosphatase 2A, regulatory B subunit, B56	IPR002554	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G09880.1	ATB' BETA Protein phosphatase 2A regulatory B subunit family protein chr3:3029902-3031931 FORWARD LENGTH=499	3.0e-27	56%
RefSeq	Arabidopsis thaliana	NP_187599.1	serine/threonine protein phosphatase 2A regulatory subunit B prime beta isoform [Arabidopsis thaliana]	3.0e-27	56%
RefSeq	Populus trichocarpa	XP_002323499.1	predicted protein [Populus trichocarpa]	6.0e-25	54%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: O04376

Fln msg: your sequence is shorter than subject: 147 - 499

Fln protein: KSVMVPLFQQLARTIGSPHFQVAERALFMWHNEYIASLVADHRDVILPIIYPVLHENSQHHWNPTVNNLTVNVLKIFMEMDSELVQECTKKHAEKQKKKEVDKKLRAEAWSRLSEVAQKVQTEQHMPPPVIPNHAQTAPPREMDGV*

Protein Length: 148

Fln nts: CAAGTCGGTAATGGTACCGCTGTTCCAGCAGCTGGCTCGTACTATCGGTAGTCCGCATTTCCAAGTGGCCGAGAGGGCATTGTTTATGTGGCACAATGAGTACATCGCAAGTTTGGTGGCGGATCACCGTGACGTGATCTTGCCGATCATCTACCCAGTTCTGCACGAGAACTCGCAACACCATTGGAATCCAACGGTGAACAACTTGACGGTCAACGTGCTCAAGATTTTCATGGAGATGGATTCGGAGCTGGTGCAGGAGTGCACCAAGAAGCATGCCGAGAAGCAAAAGAAGAAGGAGGTGGACAAGAAACTGAGGGCCGAGGCGTGGAGCCGGCTTTCAGAGGTCGCTCAAAAAGTGCAGACGGAACAGCACATGCCACCCCCGGTGATTCCCAATCATGCCCAAACCGCGCCTCCACGTGAAATGGATGGTGTGTAG___CCTAGCTCATCTTGTGTACGGTGTTAAGTAAATAGCGAGTATATTATCTAT

Fln Alignment:

HLKU4M004IJT9Q___MVPLFQQLARTIGSPHFQVAERALFMWHNEYIASLVADHRDVILPIIYPVLHENSQHHWNPXXXXXXXXXLKIFMEMDSELVQXXXXXXXXXXXXXXXXXKLRAEAWSRLSEVA
O04376________________MVPLFQQIGRCLTSSHFQVAERALFLWNNEHIVGLIAQNRSVILPIIYPTLEKNIQSHWNQAVHGLTTNIKKMFMEMDPELFEECQRQYEEKQAKSKEVEEQRQYTWKRLAEAA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain