SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene152798

Length: 234 nt

UniGene Fasta

>sp_v3.0_unigene152798
TCTGAAGGGTCAAGAGAAGCCAGAGCTTTTTGCTTGTGGATCAACTCTTTGGGAATTGAGCCTTTTGTTAACAACTTGTTTGAAGATCTTCGTGATGGAATCATCATCTTGAAGGTTATGGATATTGTTCAACCTGGAATTGTTGACTGGTCTAAAGTCAACACCAAGGAACCACTCAACAAGTTCAAGAAAGTTGAAAACTGCAATTATGCTGTGGTGCTTGGAAAGCAAATG

Ace file of the UniGene sp_v3.0_unigene152798

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Actin binding protein n=1 Tax=Polysphondylium pallidum RepID=D3BGE1_POLPA	-	-	6.0e-27	70%
FL-Next	sp=Fimbrin-like protein 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	53%
Sma3	Fimbrin, putative	-	-	3.849e-09	-

Source	Gene names
Sma3	At5g35700; At5g48460; FIM2; GSVIVT00010397001; GSVIVT00027232001; MXH1.5; POPTRDRAFT_553250; RCOM_0549750; RCOM_1626860; VITISV_020586; VITISV_022639;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	cytoskeleton	GO:0005856	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	actin binding	GO:0003779	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Actinin-type, actin-binding, conserved site	IPR001589	-	-
Sma3	Calponin homology domain	IPR001715	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	Membrane bound O-acyl transferase, MBOAT	IPR004299	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G35700.1	FIM2, FIM5 fimbrin-like protein 2 chr5:13872833-13876432 REVERSE LENGTH=687	3.0e-21	53%
RefSeq	Arabidopsis thaliana	NP_198420.1	fimbrin-like protein 2 [Arabidopsis thaliana]	3.0e-21	53%
RefSeq	Populus trichocarpa	XP_002300349.1	predicted protein [Populus trichocarpa]	1.0e-20	53%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FKI0

Fln msg: Distance to subject end: 221 aas, your sequence is shorter than subject: 78 - 687

Fln protein: SEGSREARAFCLWINSLGIEPFVNNLFEDLRDGIIILKVMDIVQPGIVDWSKVNTKEPLNKFKKVENCNYAVVLGKQM

Protein Length: 79

Fln nts: TCTGAAGGGTCAAGAGAAGCCAGAGCTTTTTGCTTGTGGATCAACTCTTTGGGAATTGAGCCTTTTGTTAACAACTTGTTTGAAGATCTTCGTGATGGAATCATCATCTTGAAGGTTATGGATATTGTTCAACCTGGAATTGTTGACTGGTCTAAAGTCAACACCAAGGAACCACTCAACAAGTTCAAGAAAGTTGAAAACTGCAATTATGCTGTGGTGCTTGGAAAGCAAATG

Fln Alignment:

HLKU4M004JSPNN___EGSREARAFCLWINSLGIEPFVNNLFEDLRDGIIILKVMDIVQPGIVDWSKVNTKEPLNKFKKVENCNYAVVLGKQM
Q9FKI0________________ETSREERCFRLWINSLGTATYVNNVFEDLRNGWVLLEVLDKVSPGSVNWKHANKPPIKMPFKKVENCNEVIKIGKEL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain