SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene152792

Length: 342 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene152792
TGAGTATGTTCTTGGTGCCGTATCTAATACTGCTTCTTATTTACGTTTGTGGGCTCTCAGTTTAGCTCATGCTGAGTTGTCAGAAGTATTTTGGGATCGAGTTATGGTTTTCTGTTTGGATAAACAAGGATGGGCAGCTATCTTTGTTGGTTGGTCTATCTGGTGTGCTCTTACTGTTGCTGTACTTTTAATTATGGAAAGTTTATCTGCTTTCCTTCATGCTCTTCGTCTTCACTGGGTTGAATTCCAAAACAAATTTTACAAAGGAGATGGTCACAAATTCCTTCCTTTCTCTTATGAAGGTATCCTTGTAAACGGTGACGACAATTAAACGATTTATGT

Ace file of the UniGene sp_v3.0_unigene152792 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	H+-or Na+-translocating f-type, v-type and A-type ATPase superfamily n=1 Tax=Micromonas sp. RCC299 RepID=C1FG71_MICSR	-	-	1.0e-35	68%
FL-Next	tr=V0/A0 complex, 116-kDa subunit of ATPase; Coccomyxa subellipsoidea C-169.	-	-	0.0	66%
Sma3	Vacuolar proton atpase, putative	-	-	1.521e-12	-

Source	Gene names
Sma3	AT4g39080; ATPvA2; ATPvA3; At2g21410; At2g28520; At4g39080; CHLREDRAFT_115936; CHLREDRAFT_438; CM0216.490.nc; F19H22.180; GSVIVT00014511001; GSVIVT00024467001; GSVIVT00035934001; LOC_Os03g14690; LOC_Os10g10500; MICPUCDRAFT_16972; MICPUN_97767; OSJNBa0029P

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	plant-type vacuole membrane	GO:0009705	Cellular Component	-
Sma3	trans-Golgi network transport vesicle membrane	GO:0012510	Cellular Component	-
Sma3	proton-transporting two-sector ATPase complex, proton-transporting domain	GO:0033177	Cellular Component	-
Sma3	hydrogen-exporting ATPase activity, phosphorylative mechanism	GO:0008553	Molecular Function	-
Sma3	hydrogen ion transmembrane transporter activity	GO:0015078	Molecular Function	-
Sma3	hydrolase activity	GO:0016787	Molecular Function	-
Sma3	ATP synthesis coupled proton transport	GO:0015986	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	ATPase, V0/A0 complex, 116kDa subunit	IPR002490	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G39080.1	VHA-A3 vacuolar proton ATPase A3 chr4:18209513-18214752 FORWARD LENGTH=821	3.0e-37	64%
RefSeq	Arabidopsis thaliana	NP_568051.1	V-type H+-transporting ATPase subunit I [Arabidopsis thaliana]	4.0e-37	64%
RefSeq	Populus trichocarpa	XP_002313024.1	predicted protein [Populus trichocarpa]	3.0e-38	62%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: I0YYP7

Fln msg: your sequence is shorter than subject: 110 - 837

Fln protein: EYVLGAVSNTASYLRLWALSLAHAELSEVFWDRVMVFCLDKQGWAAIFVGWSIWCALTVAVLLIMESLSAFLHALRLHWVEFQNKFYKGDGHKFLPFSYEGILVNGDDN*

Protein Length: 111

Fln nts: TGAGTATGTTCTTGGTGCCGTATCTAATACTGCTTCTTATTTACGTTTGTGGGCTCTCAGTTTAGCTCATGCTGAGTTGTCAGAAGTATTTTGGGATCGAGTTATGGTTTTCTGTTTGGATAAACAAGGATGGGCAGCTATCTTTGTTGGTTGGTCTATCTGGTGTGCTCTTACTGTTGCTGTACTTTTAATTATGGAAAGTTTATCTGCTTTCCTTCATGCTCTTCGTCTTCACTGGGTTGAATTCCAAAACAAATTTTACAAAGGAGATGGTCACAAATTCCTTCCTTTCTCTTATGAAGGTATCCTTGTAAACGGTGACGACAATTAA___ACGATTTATGT

Fln Alignment:

HLKU4M004H2AVG___EYVLGAVSNTASYLRLWALSLAHAELSEVFWDRVMVFCLDKQGWAAIFVGWSIWCALTVAVLLIMESLSAFLHALRLHWVEFQNKFYKGDGHKFLPFSYEGIL
I0YYP7________________EFVLGAVSNTASYLRLWALSLAHSQLSAVFYDRVLMTAIKYNSWVAVFIGFFVFALATLGVLMLMETLSAFLHALRLHWVEFQNKFYHGDGYKFMPFSFETVL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain