SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene152790

Length: 353 nt

UniGene Fasta

>sp_v3.0_unigene152790
AATCTATGAGCCAGGATGTGGCTTGATGAACGTAGACTTCTCATTCGGTACACGACGAATACTTGTATCAGGTGTTGGTCAAGAATGGCTCTACATTACCAGAAGAAGCGATGTACATGATTCGGTTCCACTCCTTCTATCCATGGCACAAAGAGGGACAATACGATCATCTATGTAATGACAGAGACAGAGAAATGCTGCCTTGGGTACAACGATTCAATCCCTTCGATCTCTATTCCAAGAGCGACGAGAGACCCAGTTGGGAGGAACTGAAAGACTACTACATGAAACTCATCGAAAAGTACATCCCTGGCAAGCTCATCTGGTAACCTCATCTGTTTGATTGATTTGTA

Ace file of the UniGene sp_v3.0_unigene152790

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Inositol oxygenase n=3 Tax=Danio rerio RepID=MIOX_DANRE	-	-	3.0e-32	64%
FL-Next	tr=PRE87 protein; Pinus radiata (Monterey pine) (Pinus insignis).	-	-	0.0	58%
Sma3	Myoinositol oxygenase, putative	-	-	5.743e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	Inositol oxygenase.	EC:1.13.99.1	-	4.61e-28	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Ascorbate and aldarate metabolism	00053		4.61e-28	%
Sma3	Inositol phosphate metabolism	00562		4.61e-28	%

Source	Gene names
Sma3	At2g19800; At4g26260; At5g56640; F6F22.17; GSVIVT00016624001; LOC_Os06g36560; MIK19.9; MIOX; MIOX2; MIOX4; MIOX5; Os06g0561000; OsI_23379; OsJ_21699; P0456F09.5; P0528E12.30; PHYPADRAFT_58210; POPTRDRAFT_418574; POPTRDRAFT_583859; POPTRDRAFT_745185; PRE87

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	inositol oxygenase activity	GO:0050113	Molecular Function	-
Sma3	inositol catabolic process	GO:0019310	Biological Process	-
Sma3	L-ascorbic acid biosynthetic process	GO:0019853	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Metal-dependent phosphohydrolase, HD domain	IPR003607	-	0.0	-
Sma3	Inositol oxygenase	IPR007828	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G19800.1	MIOX2 myo-inositol oxygenase 2 chr2:8531106-8533354 REVERSE LENGTH=317	3.0e-31	54%
RefSeq	Arabidopsis thaliana	NP_565459.1	inositol oxygenase [Arabidopsis thaliana]	5.0e-31	54%
RefSeq	Populus trichocarpa	XP_002330954.1	predicted protein [Populus trichocarpa]	3.0e-29	52%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: O65014

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 109 - 217

Fln protein: SMSQDVA**T*TSHSVHDEYLYQVLVKNGSTLPEEAMYMIRFHSFYPWHKEGQYDHLCNDRDREMLPWVQRFNPFDLYSKSDERPSWEELKDYYMKLIEKYIPGKLIW*

Protein Length: 110

Fln nts: AATCTATGAGCCAGGATGTGGCTTGATGAACGTAGACTTCTCATTCGGTACACGACGAATACTTGTATCAGGTGTTGGTCAAGAATGGCTCTACATTACCAGAAGAAGCGATGTACATGATTCGGTTCCACTCCTTCTATCCATGGCACAAAGAGGGACAATACGATCATCTATGTAATGACAGAGACAGAGAAATGCTGCCTTGGGTACAACGATTCAATCCCTTCGATCTCTATTCCAAGAGCGACGAGAGACCCAGTTGGGAGGAACTGAAAGACTACTACATGAAACTCATCGAAAAGTACATCCCTGGCAAGCTCATCTGGTAA___CCTCATCTGTTTGATTGATTTGTA

Fln Alignment:

HLKU4M004JRMHL___HDEYLYQVLVKNGSTLPEEAMYMIRFHSFYPWHKEGQYDHLCNDRDREMLPWVQRFNPFDLYSKSDERPSWEELKDYYMKLIEKYIPGKLIW
O65014________________HDEYMYLVAKMNNTTLPPAALFIIRFHSFYPLHREGAYMHLLNDEDKEMLEWLKIFNKYDLYSKSKVRIDVEEVKPYYQSLIDKYFPPKLRW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain