SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene152774

Length: 471 nt

UniGene Fasta

>sp_v3.0_unigene152774
ACCAACCGCCACTCCTGCAATGACCACTACTACACGATGGGAGGGAGAACCATTCCTGGCCTCCGCATGAATGGAATGAATGTGTTGGCAGTGAAGCAAGGCATGGCTGCAGTCAGAGAGCACTGCTCCACTGGCAAGGGCCCCATGTTCGTTGAGTTCGACACCTATCGCTATCACGGTCACTCCATGTCCGACCCCGGCACCACCTACAGAACCAGAGACGAGGTGGGCGGAGTGAGAACTGCTCGCGACCCAATTGAGTATGTGAAGAAGCTGCTGGTGGACTACTCCCTGTGCACTGCTGACGAGCTGAAGGCCATGGAGAAGGACATCCGCAACAGTGTGCAGGACTCGCTCACTGCTGCCAAGGCTGGTAAGTTCCCCACTCCCGATGCCTTGACTCGTGACATCTACGCCACCATTGACGACAAGAACGAACCAATTGACTTCATTCGCATGCCAGACTACCAC

Ace file of the UniGene sp_v3.0_unigene152774

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pyruvate dehydrogenase E1 component alpha subunit, mitochondrial (PDHE1-A) n=1 Tax=Ectocarpus siliculosus RepID=D7FIP4_ECTSI	-	-	1.99993e-41	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	43%
Sma3	PDHE1-A	-	-	5.273e-12	-

Source	ECs	Term	Type	e value	Identity
Sma3	Pyruvate dehydrogenase (acetyl-transferring).	EC:1.2.4.1	-	1.82e-24	-

Source	KEGGs	Term	e value	Identity
Sma3	Glycolysis / Gluconeogenesis	00010	1.82e-24	%
Sma3	Citrate cycle (TCA cycle)	00020	1.82e-24	%
Sma3	Valine, leucine and isoleucine biosynthesis	00290	1.82e-24	%
Sma3	Pyruvate metabolism	00620	1.82e-24	%
Sma3	Butanoate metabolism	00650	1.82e-24	%
Sma3	Biosynthesis of phenylpropanoids	01061	1.82e-24	%
Sma3	Biosynthesis of terpenoids and steroids	01062	1.82e-24	%
Sma3	Biosynthesis of alkaloids derived from shikimate pathway	01063	1.82e-24	%
Sma3	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	1.82e-24	%
Sma3	Biosynthesis of alkaloids derived from histidine and purine	01065	1.82e-24	%
Sma3	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	1.82e-24	%
Sma3	Biosynthesis of plant hormones	01070	1.82e-24	%
Sma3	Metabolic pathways	01100	1.82e-24	%
Sma3	Biosynthesis of secondary metabolites	01110	1.82e-24	%

Source	Gene names
Sma3	AT1G59900; At1g24180; At1g59900; CHLREDRAFT_193810; F23H11.21; F3I6.11; GSVIVT00025274001; GSVIVT00028924001; IAR4; MICPUN_89160; OJ1136_C11.8; Os02g0739600; Os06g0246500; OsI_22361; OsJ_08320; OsJ_20802; P0684F11.25; PDC1; PDH E1a-1; PDH E1a-2; PDHA1; PH

Source	GOs	Term	Type	Identity
Sma3	mitochondrial matrix	GO:0005759	Cellular Component	-
Sma3	intracellular membrane-bounded organelle	GO:0043231	Cellular Component	-
Sma3	pyruvate dehydrogenase (acetyl-transferring) activity	GO:0004739	Molecular Function	-
Sma3	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor	GO:0016624	Molecular Function	-
Sma3	glycolysis	GO:0006096	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Dehydrogenase, E1 component	IPR001017	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y	IPR017597	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G59900.1	AT-E1 ALPHA, E1 ALPHA pyruvate dehydrogenase complex E1 alpha subunit chr1:22051368-22053660 FORWARD LENGTH=389	5.0e-39	46%
RefSeq	Arabidopsis thaliana	NP_176198.1	pyruvate dehydrogenase complex E1 alpha subunit [Arabidopsis thaliana]	7.0e-39	46%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWY7

Fln msg: STOP codon was not found. Distance to subject end: 2 aas, your sequence is shorter than subject: 157 - 400

Fln protein: TNRHSCNDHYYTMGGRTIPGLRMNGMNVLAVKQGMAAVREHCSTGKGPMFVEFDTYRYHGHSMSDPGTTYRTRDEVGGVRTARDPIEYVKKLLVDYSLCTADELKAMEKDIRNSVQDSLTAAKAGKFPTPDALTRDIYATIDDKNEPIDFIRMPDYH

Protein Length: 158

Fln nts: ACCAACCGCCACTCCTGCAATGACCACTACTACACGATGGGAGGGAGAACCATTCCTGGCCTCCGCATGAATGGAATGAATGTGTTGGCAGTGAAGCAAGGCATGGCTGCAGTCAGAGAGCACTGCTCCACTGGCAAGGGCCCCATGTTCGTTGAGTTCGACACCTATCGCTATCACGGTCACTCCATGTCCGACCCCGGCACCACCTACAGAACCAGAGACGAGGTGGGCGGAGTGAGAACTGCTCGCGACCCAATTGAGTATGTGAAGAAGCTGCTGGTGGACTACTCCCTGTGCACTGCTGACGAGCTGAAGGCCATGGAGAAGGACATCCGCAACAGTGTGCAGGACTCGCTCACTGCTGCCAAGGCTGGTAAGTTCCCCACTCCCGATGCCTTGACTCGTGACATCTACGCCACCATTGACGACAAGAACGAACCAATTGACTTCATTCGCATGCCAGACTACCAC

Fln Alignment:

HLKU4M004JHG44___CNDHYYTMG---------------GRTIPGLRMNGMNVLAVKQGMAAVREHCSTGKGPMFVEFDTYRYHGHSMSDPGTTYRTRDEVGGVRTARDPIEYVKKLLVDYSLCTADELKAMEKDIRNSVQDSLTAAKAGKFPTPDALTRDIY
A9NWY7________________CENNHYGMGTAEWRAAKSPAYYKRGDYAPGLKVDGMDVFAVKQAAKFAKEH-ALKNGPIILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERVRKLVLAHNIATPAELKDIEKEAKKEVDDAIALAKECSLPDSSELFSHVY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain