SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene152700

Length: 403 nt

UniGene Fasta

>sp_v3.0_unigene152700
TGGAAGTGGGTTTGTATTGCCATCTGCGTGCGCTAAAGCTGGCATAGTCGCAATGACTAGATCGCTAGCAGTTGAATGGGCAAAATATGGAATGAGGTTCAATGGTATCTCTCCGGGACCGATTTTCACTGAAGGAGCTTTTAGTAGACTAGATCCGACTGGAGCATTCTCTGCCAATGCCAAGTCTCGTTTGCCAATCGGACGCCTCGGAGAACAAGAAGAGCTGTCTAATCTGGCTAGCTATCTATTGAGCGAATACGCCAACTGGCTGACTGGTCAAGTGATCAACTTTGACGGCGGAGAGCTCAACTACATGTCGGGCGAGTTCAATTTCTTGTACTCAATCAAACCGGAGCAGTGGGATACGATGGAGGCCATGATTCGACAGTCAAACACCAAGAGC

Ace file of the UniGene sp_v3.0_unigene152700

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to 2,4-dienoyl-CoA reductase [Gallus gallus]	-	-	8.00141e-43	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	36%

Source	Gene names
Sma3	PHYPADRAFT_158233;

Source	GOs	Term	Type	Identity
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUB3

Fln msg: STOP codon was not found. Distance to subject end: 2 aas, your sequence is shorter than subject: 134 - 296

Fln protein: GSGFVLPSACAKAGIVAMTRSLAVEWAKYGMRFNGISPGPIFTEGAFSRLDPTGAFSANAKSRLPIGRLGEQEELSNLASYLLSEYANWLTGQVINFDGGELNYMSGEFNFLYSIKPEQWDTMEAMIRQSNTKS

Protein Length: 135

Fln nts: TGGAAGTGGGTTTGTATTGCCATCTGCGTGCGCTAAAGCTGGCATAGTCGCAATGACTAGATCGCTAGCAGTTGAATGGGCAAAATATGGAATGAGGTTCAATGGTATCTCTCCGGGACCGATTTTCACTGAAGGAGCTTTTAGTAGACTAGATCCGACTGGAGCATTCTCTGCCAATGCCAAGTCTCGTTTGCCAATCGGACGCCTCGGAGAACAAGAAGAGCTGTCTAATCTGGCTAGCTATCTATTGAGCGAATACGCCAACTGGCTGACTGGTCAAGTGATCAACTTTGACGGCGGAGAGCTCAACTACATGTCGGGCGAGTTCAATTTCTTGTACTCAATCAAACCGGAGCAGTGGGATACGATGGAGGCCATGATTCGACAGTCAAACACCAAGAGC

Fln Alignment:

HLKU4M004ICH3I___ACAKAGIVAMTRSLAVEWAK-YGMRFNGISPGPIFTEGAFSRLDPTGAFSANAKSRLPIGRLGEQEELSNLASYLLSEYANWLTGQVINFDGG
A9NUB3________________SAAKAAVDSITRSLALEWGTDYDIRVNGIAPGPIGDTPGMDKLAPE-EIKDDPRFEQPLYRLGEKWDIAMAAVYLASDAGKFVNGATLIVDGG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain