SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene152680

Length: 351 nt

UniGene Fasta

>sp_v3.0_unigene152680
TGTCGGTCTTAACATTGATCCCAGTTTGACTAAATCCAACAAGCTCGTCGGTAACATTCTCGGCCACTCTGGTAAGTTACCCCAAATCTACAAGAAGATCGAAATCAGTTACTACCTCTTGAGAAAACTTTTGGGTGTTAGAGCTGATGCTACCAGCACTAAGGTCAAGAAGATCACAAAGGGTGAAGTTCTCATGGTTAACGTCGGTTCCACTTCTACCGGTGGTTCAGTCGATAGCATTGAAGAACAAAAGATCAAGATTTCTTTGATCGGTAACCCCGTTTGCGCTCAAATCGGAGAAAAGGTCACTATTTCCAGAAGAATCGAAAACAAGTGGAGATTGATCGGTTG

Ace file of the UniGene sp_v3.0_unigene152680

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Translation initiation factor eIF-2, gamma subunit n=1 Tax=Thalassiosira pseudonana RepID=B5YNZ5_THAPS	-	-	9.0e-26	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%

Source	Gene names
Sma3	AT4g18330; At1g04170; CHLREDRAFT_126673; EIF2G; F20D22.6; GSVIVT00031929001; GSVIVT00035007001; LOC_Os12g07740; LOC_Os12g41400; MICPUCDRAFT_28977; MICPUN_97729; OSTLU_32338; Os12g0176800; Os12g0607100; OsI_37667; OsI_39040; OsJ_35408; OsJ_36806; PHATRDRAF

Source	GOs	Term	Type	Identity
Sma3	translation initiation factor activity	GO:0003743	Molecular Function	-
Sma3	GTPase activity	GO:0003924	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Protein synthesis factor, GTP-binding	IPR000795	-	-
Sma3	Translation elongation factor EFTu/EF1A, domain 2	IPR004161	-	-
Sma3	Translation initiation factor 2, gamma subunit, C-terminal	IPR015256	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G04170.1	EIF2 GAMMA eukaryotic translation initiation factor 2 gamma subunit chr1:1097423-1099702 FORWARD LENGTH=465	7.0e-27	48%
RefSeq	Arabidopsis thaliana	NP_171913.1	translation initiation factor eIF-2 gamma subunit [Arabidopsis thaliana]	1.0e-26	48%
RefSeq	Populus trichocarpa	XP_002303475.1	predicted protein [Populus trichocarpa]	3.0e-27	46%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUT2

Fln msg: Distance to subject end: 16 aas, your sequence is shorter than subject: 116 - 464

Fln protein: VGLNIDPSLTKSNKLVGNILGHSGKLPQIYKKIEISYYLLRKLLGVRADATSTKVKKITKGEVLMVNVGSTSTGGSVDSIEEQKIKISLIGNPVCAQIGEKVTISRRIENKWRLIG

Protein Length: 117

Fln nts: TGTCGGTCTTAACATTGATCCCAGTTTGACTAAATCCAACAAGCTCGTCGGTAACATTCTCGGCCACTCTGGTAAGTTACCCCAAATCTACAAGAAGATCGAAATCAGTTACTACCTCTTGAGAAAACTTTTGGGTGTTAGAGCTGATGCTACCAGCACTAAGGTCAAGAAGATCACAAAGGGTGAAGTTCTCATGGTTAACGTCGGTTCCACTTCTACCGGTGGTTCAGTCGATAGCATTGAAGAACAAAAGATCAAGATTTCTTTGATCGGTAACCCCGTTTGCGCTCAAATCGGAGAAAAGGTCACTATTTCCAGAAGAATCGAAAACAAGTGGAGATTGATCGGTTG

Fln Alignment:

HLKU4M004IZDQ3___VGLNIDPSLTKSNKLVGNILGHSGKLPQIYKKIEISYYLLRKLLGVRADATST--KVKKITKGEVLMVNXXXXXXXXXXDSIEEQKIKISLIGNPVCAQIGEKVTISRRIENKWRLIG
A9NUT2________________VGTTIDPTLTRADRLVGQVLGEVGELPDIFVELEVNFFLLRRLLGVRTKGTEKQGKVSKLAKGEVLMLNIGSMSTGARVLAVKNDLAKLQLT-SPVCTSKGEKMALSRRVEKHWRLIG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain