SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene152575

Length: 366 nt

UniGene Fasta

>sp_v3.0_unigene152575
TCACCATCTTCTCATACCCACACAGCCCAAACGTAGCTAAGGCCCAAATCGCAGGAAAATACGGAGGTGTTGAGGTTGAGTACGCGCCGAACTTTGAAATGGGAAAGACCAACAAGACTCCTGAGTTCTTACAAAAGAATCCAGCTGGACAAGTCCCAACTCTTGACACTGCTGAAGGTGGAATCTTCGAGTCCACTGCCATCGCTTACTTCATTGCTCGTTCTGGCTCTGATGCCGCTGGTCTCGTAGGAAGCACTCCTTTCCAACAAGCACAAGTCGACCAATGGGTTCACTTTGCTCGTTCTCGCTTCGAAACTATTTTCCCTCTTTACGGATTTACCTTTGGATGGATGAAATACGACCAAA

Ace file of the UniGene sp_v3.0_unigene152575

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Elongation factor 1-gamma 1 n=9 Tax=Oryza sativa RepID=EF1G1_ORYSJ	-	-	1.0e-19	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%

Source	Gene names
Sma3	POPTRDRAFT_836101;

Source	GOs	Term	Type	Identity
Sma3	eukaryotic translation elongation factor 1 complex	GO:0005853	Cellular Component	-
Sma3	translation elongation factor activity	GO:0003746	Molecular Function	-
Sma3	translational elongation	GO:0006414	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Translation elongation factor EF1B, gamma chain, conserved	IPR001662	-	-
Sma3	Glutathione S-transferase, N-terminal	IPR004045	-	-
Sma3	Glutathione S-transferase, C-terminal	IPR004046	-	-
Sma3	Glutathione S-transferase, C-terminal-like	IPR010987	-	-
Sma3		IPR012335	-	-
Sma3	Glutathione S-transferase/chloride channel, C-terminal	IPR017933	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002328789.1	predicted protein [Populus trichocarpa]	1.0e-24	47%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWP6

Fln msg: Distance to subject end: 301 aas, atg_distance in limit (1-15): atg_distance = 4, W2: There is no M at the beginning, your sequence is shorter than subject: 121 - 424

Fln protein: TIFSYPHSPNVAKAQIAGKYGGVEVEYAPNFEMGKTNKTPEFLQKNPAGQVPTLDTAEGGIFESTAIAYFIARSGSDAAGLVGSTPFQQAQVDQWVHFARSRFETIFPLYGFTFGWMKYDQ

Protein Length: 122

Fln nts: TCACCATCTTCTCATACCCACACAGCCCAAACGTAGCTAAGGCCCAAATCGCAGGAAAATACGGAGGTGTTGAGGTTGAGTACGCGCCGAACTTTGAAATGGGAAAGACCAACAAGACTCCTGAGTTCTTACAAAAGAATCCAGCTGGACAAGTCCCAACTCTTGACACTGCTGAAGGTGGAATCTTCGAGTCCACTGCCATCGCTTACTTCATTGCTCGTTCTGGCTCTGATGCCGCTGGTCTCGTAGGAAGCACTCCTTTCCAACAAGCACAAGTCGACCAATGGGTTCACTTTGCTCGTTCTCGCTTCGAAACTATTTTCCCTCTTTACGGATTTACCTTTGGATGGATGAAATACGACCAAA

Fln Alignment:

HLKU4M004I2ACR___NVAKAQIAGKYGGVEVEYAPNFEMGKTNKTPEFLQKNPAGQVPTLDTAEGGIFESTAIAYFIARSGSDAAGLVGSTPFQQAQVDQWVHFA
A9NWP6________________NAFKALIAAEYVGVKINLAPNFEMGVTNKSQKFLSMNPIGKVPVLETPEGAVFESNAIARYVARLKDDNS-LFGSSLIDYGHVEQWIDFS

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain