SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene152534

Length: 513 nt

UniGene Fasta

>sp_v3.0_unigene152534
AGCGAGCCATGACAGAGTATCGAGAGTTTAGCTGTGCGGATATGTTCCGCTTCAACAACGTCAATCTCGACAAGCTCACTGAAACCTACAATCTGGGCTTCTACCTGCAGTACCTGGCCACGTGGCCCGAGTACTGCACCGTCGCTGCCGACCCCACTGGCCGCACCATGGCCTACATCTTGGGCAAGGCCGAGGGGCGCGGCACGGACTGGCACGGCCACGTCACCGCCGTCACCGTGGCGCCCGAGTACCGACGCCTGGGCCTCGGCGAGCGCCTCATGTCCCTCCTCGAGCACGTCTCCGAGCACGTGCACAACGCGTATTTTGTGGACTTGTTCGTGCGAGTGTCGAATCTCGTGGCGGTGGGCATGTACAAGAAGTTCGGCTACGTGGTCTATCGCCAGGTCATGGGCTACTACTCGGGCGAGGAGGACGCCTACGACATGCGGAAGCCACTACCGCGAGACGTGGACAAGAAGTCAGTCGCGCCGCTCGCCAACCCCAAGGTCAAAC

Ace file of the UniGene sp_v3.0_unigene152534

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	N-acetyltransferase n=1 Tax=Dictyostelium fasciculatum RepID=F4PSM6_9MYCE	-	-	0.0	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%
Sma3	Silencing group B protein	-	-	3.583e-12	-

Source	Gene names
Sma3	CHLREDRAFT_173749; F10O3.2; GSVIVT00023724001; LOC_Os03g49230; MICPUCDRAFT_32793; MICPUN_108153; NAT; NAT5; OSJNBb0017F17.13; OSTLU_37367; Os03g0699400; OsI_13154; OsJ_12228; Ot04g01800; PHATRDRAFT_28723; PHYPADRAFT_108609; POPTRDRAFT_643297; POPTRDRAFT_8

Source	GOs	Term	Type	Identity
Sma3	N-acetyltransferase activity	GO:0008080	Molecular Function	-
Sma3	transferase activity	GO:0016740	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	GNAT domain	IPR000182	-	0.0	-
Sma3	Acyl-CoA N-acyltransferase	IPR016181	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G03150.1	Acyl-CoA N-acyltransferases (NAT) superfamily protein chr1:756461-758441 FORWARD LENGTH=174	61%
RefSeq	Arabidopsis thaliana	NP_563677.1	peptide alpha-N-acetyltransferase [Arabidopsis thaliana]	61%
RefSeq	Populus trichocarpa	XP_002307586.1	silencing group B protein [Populus trichocarpa]	60%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NRM6

Fln msg: STOP codon was not found. Distance to subject end: 6 aas,

Fln protein: MTEYREFSCADMFRFNNVNLDKLTETYNLGFYLQYLATWPEYCTVAADPTGRTMAYILGKAEGRGTDWHGHVTAVTVAPEYRRLGLGERLMSLLEHVSEHVHNAYFVDLFVRVSNLVAVGMYKKFGYVVYRQVMGYYSGEEDAYDMRKPLPRDVDKKSVAPLANPKVK

Protein Length: 169

Fln nts: AGCGAGCC_-_ATGACAGAGTATCGAGAGTTTAGCTGTGCGGATATGTTCCGCTTCAACAACGTCAATCTCGACAAGCTCACTGAAACCTACAATCTGGGCTTCTACCTGCAGTACCTGGCCACGTGGCCCGAGTACTGCACCGTCGCTGCCGACCCCACTGGCCGCACCATGGCCTACATCTTGGGCAAGGCCGAGGGGCGCGGCACGGACTGGCACGGCCACGTCACCGCCGTCACCGTGGCGCCCGAGTACCGACGCCTGGGCCTCGGCGAGCGCCTCATGTCCCTCCTCGAGCACGTCTCCGAGCACGTGCACAACGCGTATTTTGTGGACTTGTTCGTGCGAGTGTCGAATCTCGTGGCGGTGGGCATGTACAAGAAGTTCGGCTACGTGGTCTATCGCCAGGTCATGGGCTACTACTCGGGCGAGGAGGACGCCTACGACATGCGGAAGCCACTACCGCGAGACGTGGACAAGAAGTCAGTCGCGCCGCTCGCCAACCCCAAGGTCAAAC

Fln Alignment:

HLKU4M004IF1UD___LGFYLQYLATWPEYCTVAADPTGRTMAYILGKAEGRGTDWHGHVTAVTVAPEYRRLGLGERLMSLLEHVSEHVHNAYFVDLFVRVSNLVAVGMYKKFGYVVYRQVMGYYSGEEDAYDMRKPLPRDVDKKSVAPLANP
A9NRM6________________MSFYLTYLARWPDYFHVAEGPGNRTMGYIMGKVEGQGESWHGHVTAVTVAPEYRRQQLAKKLMHLLEEISDKTYNAYFVDLFVRASNSPAIKMYEKLGYVIYRRVLRYYSGEEDGLDMRKALPRDVEKKSIVPMKRP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain