SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene152380

Length: 355 nt

UniGene Fasta

>sp_v3.0_unigene152380
CAACACCTGACTTCCTTCACTTCCACGGACATCATGGAGACGAAAGAAAGATCACTATTATCTTTAACACCTTTGTCTTCTGCCAACTGTTCAACGAAATTAACTGCCGCCGTTTGGAAGATGAGAAGAACGTTTTTAACAGATTCCTTGATAACTATATCTTCCTTGCTGTCGTTGTTGGAACTGCCATCGTTCAATTTTTGCTTGTCCAATTCTGTGGTGCTTTCGCCAAGACTATTGCTTTGGATGTCTCTCAATGGTTCTTCTGTATTGGTATTGGTGCTTTCTCTATTCCATGGGCCATCCTTTTGAGGTGCATTCCTGTTCCTGATGAGCACACTCGTACTGCTGCAAG

Ace file of the UniGene sp_v3.0_unigene152380

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	P-type ATPase n=1 Tax=Dictyostelium fasciculatum RepID=F4Q6Z7_9MYCE	-	-	1.0e-21	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	41%

Source	ECs	Term	Type	e value	Identity
Sma3	Calcium-transporting ATPase.	EC:3.6.3.8	-	9.13e-06	-

Source	Gene names
Sma3	GSVIVT00014954001; GSVIVT00020082001; GSVIVT00020088001; LOC_Os03g42020; OJ1285_H07.3; Os03g0616400; OsI_12613; OsJ_11734; RCOM_0579970; SCA1; VITISV_002636; VITISV_016249; VITISV_021532;

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	damaged DNA binding	GO:0003684	Molecular Function	-
Sma3	DNA-directed DNA polymerase activity	GO:0003887	Molecular Function	-
Sma3	calcium-transporting ATPase activity	GO:0005388	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	GO:0015662	Molecular Function	-
Sma3	DNA repair	GO:0006281	Biological Process	-
Sma3	ATP biosynthetic process	GO:0006754	Biological Process	-
Sma3	cation transport	GO:0006812	Biological Process	-
Sma3	calcium ion transport	GO:0006816	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, P-type, H+ transporting proton pump	IPR000695	-	-
Sma3	DNA-repair protein, UmuC-like	IPR001126	-	-
Sma3	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	-
Sma3	ATPase, P-type cation-transporter, N-terminal	IPR004014	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	ATPase, P-type cation-transporter, C-terminal	IPR006068	-	-
Sma3	ATPase, P-type, calcium-transporting, PMCA-type	IPR006408	-	-
Sma3	ATPase, P-type, ATPase-associated domain	IPR008250	-	-
Sma3	DNA-repair protein, UmuC-like, N-terminal	IPR017963	-	-
Sma3	ATPase, P-type phosphorylation site	IPR018303	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G57110.1	ACA8, AT-ACA8 autoinhibited Ca2+ -ATPase, isoform 8 chr5:23109729-23116857 REVERSE LENGTH=1074	5.0e-24	46%
RefSeq	Arabidopsis thaliana	NP_851200.1	calcium-transporting ATPase 8 [Arabidopsis thaliana]	6.0e-24	46%
RefSeq	Populus trichocarpa	XP_002322655.1	autoinhibited calcium ATPase [Populus trichocarpa]	9.0e-25	45%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A955

Fln msg: Distance to subject end: 21 aas, your sequence is shorter than subject: 117 - 197

Fln protein: TPDFLHFHGHHGDERKITIIFNTFVFCQLFNEINCRRLEDEKNVFNRFLDNYIFLAVVVGTAIVQFLLVQFCGAFAKTIALDVSQWFFCIGIGAFSIPWAILLRCIPVPDEHTRTAA

Protein Length: 118

Fln nts: CAACACCTGACTTCCTTCACTTCCACGGACATCATGGAGACGAAAGAAAGATCACTATTATCTTTAACACCTTTGTCTTCTGCCAACTGTTCAACGAAATTAACTGCCGCCGTTTGGAAGATGAGAAGAACGTTTTTAACAGATTCCTTGATAACTATATCTTCCTTGCTGTCGTTGTTGGAACTGCCATCGTTCAATTTTTGCTTGTCCAATTCTGTGGTGCTTTCGCCAAGACTATTGCTTTGGATGTCTCTCAATGGTTCTTCTGTATTGGTATTGGTGCTTTCTCTATTCCATGGGCCATCCTTTTGAGGTGCATTCCTGTTCCTGATGAGCACACTCGTACTGCTGCAAG

Fln Alignment:

HLKU4M004IY2I1___HFHGHHGDERKITIIFNTFVFCQLFNEINCRRLEDEKNVFNRFLDNYIFLAVVVGTAIVQFLLVQFCGAFAKTIALDVSQWFFCIGIGAFSIPWAILLRCIPVPDE
D5A955________________HYKTGRADLVRNTVIFNAFVFCQIFNEFNSRK-PDQKNIFEGLLSSHLFIGIISITLVLQVLIVEFAGKIASTTPLDWEKWIVCIVIGFISWPLAAIAKFIPVPEK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain