SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene152374

Length: 248 nt

UniGene Fasta

>sp_v3.0_unigene152374
CTTCTTTGGACGACGAGGGCAAGAAGGTCAAGGCTTCTTCTGAGAGCGTCTCAAAATTTAGAAAGTTTTTGTCTTCTCTTGCTGACGTTTATGTCAACGATGCTTTTGGTGCAGCACATAGAGCACACAGTTCCATCGTTGGAATTGATGTACAACAAAGAGTCGCAGGGTTGTTGATGAAGAAAGAGTTAGTCTATTTCTCCAAAGCTCTCGAATCTCCTAAAAGACCTTTTCTCGCTATTTTGGGA

Ace file of the UniGene sp_v3.0_unigene152374

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Phosphoglycerate kinase n=2 Tax=Hypocrea RepID=PGK_TRIVI	-	-	2.0e-21	64%
FL-Next	sp=Phosphoglycerate kinase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%
Sma3	Phosphoglycerate kinase	-	-	3.02e-31	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphoglycerate kinase.	EC:2.7.2.3	-	5.732e-31	-

Source	KEGGs	Term	e value	Identity
Sma3	Glycolysis / Gluconeogenesis	00010	5.732e-31	%
Sma3	Carbon fixation in photosynthetic organisms	00710	5.732e-31	%
Sma3	Biosynthesis of phenylpropanoids	01061	5.732e-31	%
Sma3	Biosynthesis of terpenoids and steroids	01062	5.732e-31	%
Sma3	Biosynthesis of alkaloids derived from shikimate pathway	01063	5.732e-31	%
Sma3	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	5.732e-31	%
Sma3	Biosynthesis of alkaloids derived from histidine and purine	01065	5.732e-31	%
Sma3	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	5.732e-31	%
Sma3	Biosynthesis of plant hormones	01070	5.732e-31	%
Sma3	Metabolic pathways	01100	5.732e-31	%
Sma3	Biosynthesis of secondary metabolites	01110	5.732e-31	%

Source	Gene names
Sma3	At1g79550; At1g79550/T8K14.3; PGK; PGK2; PGK5; PGKP; T8K14.3; THAPSDRAFT_25116;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	phosphoglycerate kinase activity	GO:0004618	Molecular Function	-
Sma3	glycolysis	GO:0006096	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Phosphoglycerate kinase	IPR001576	-	-
Sma3	Phosphoglycerate kinase, N-terminal	IPR015824	-	-
Sma3	Phosphoglycerate kinase, C-terminal	IPR015901	-	-
Sma3	Phosphoglycerate kinase, conserved site	IPR015911	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G56190.1	Phosphoglycerate kinase family protein chr1:21028403-21030454 FORWARD LENGTH=478	1.0e-16	57%
RefSeq	Arabidopsis thaliana	NP_001117503.1	phosphoglycerate kinase [Arabidopsis thaliana]	9.0e-17	57%
RefSeq	Populus trichocarpa	XP_002315067.1	predicted protein [Populus trichocarpa]	2.0e-16	57%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKQ1

Fln msg: Distance to subject end: 172 aas, your sequence is shorter than subject: 82 - 472

Fln protein: SLDDEGKKVKASSESVSKFRKFLSSLADVYVNDAFGAAHRAHSSIVGIDVQQRVAGLLMKKELVYFSKALESPKRPFLAILG

Protein Length: 83

Fln nts: CTTCTTTGGACGACGAGGGCAAGAAGGTCAAGGCTTCTTCTGAGAGCGTCTCAAAATTTAGAAAGTTTTTGTCTTCTCTTGCTGACGTTTATGTCAACGATGCTTTTGGTGCAGCACATAGAGCACACAGTTCCATCGTTGGAATTGATGTACAACAAAGAGTCGCAGGGTTGTTGATGAAGAAAGAGTTAGTCTATTTCTCCAAAGCTCTCGAATCTCCTAAAAGACCTTTTCTCGCTATTTTGGGA

Fln Alignment:

HLKU4M004H9P5G___FRKFLSSLADVYVNDAFGAAHRAHSSIVGID--VQQRVAGLLMKKELVYFSKALESPKRPFLAILG
B8LKQ1________________FAKKLASVADLYVNDAFGTAHRAHASTEGVTKYLKPAVAGFLMQKELDYLVGAVSVPKRPFAAIVG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain