SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene152332

Length: 417 nt

UniGene Fasta

>sp_v3.0_unigene152332
AATCGGGCCTCGGTCTGCCGCAGTACTTCAAGGACCACATTGTCTACTACGCAGGCCCAGCCAAGACTCCTGAGGGTCATGCCAGTGGCTCGTTTGGACCAACCACTGCGGGACGAATGGACCCTTATATCGACACCTTCATGGCACATGGTGGTTCGATGATCTCCCTGGCCAAGGGCAACCGCTCAGCACAGGTTGCCAATGCCTGCAAGCAGTACAAGGGCTTCTATCTGGGCTCCATCGGAGGAACGGCGGCTTCGCTCGCCTCCAGCTGTATCAAGAAGGTTGAGGTGCTCGACTTTCCCGAACTTGGTATGGAAGCTGTGTGGAAGATCGACGTTGAAAACTTTCCTTGCTTCATTCTCATCGATCACAATGGAAATGACTTCTTCAAGGGTTTGATCTAATCGACGAAGC

Ace file of the UniGene sp_v3.0_unigene152332

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Fumarate hydratase n=1 Tax=Volvox carteri f. nagariensis RepID=D8UCM0_VOLCA	-	-	0.0	74%
FL-Next	tr=Fumarate hydratase; Volvox carteri (Green alga).	-	-	0.0	74%
Sma3	Fumarate hydratase	-	-	6.74e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	Fumarate hydratase.	EC:4.2.1.2	-	1.618e-08	-

Source	KEGGs	Term	e value	Identity
Sma3	Citrate cycle (TCA cycle)	00020	1.618e-08	%
Sma3	Carbon fixation pathways in prokaryotes	00720	1.618e-08	%
Sma3	Biosynthesis of phenylpropanoids	01061	1.618e-08	%
Sma3	Biosynthesis of terpenoids and steroids	01062	1.618e-08	%
Sma3	Biosynthesis of alkaloids derived from shikimate pathway	01063	1.618e-08	%
Sma3	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	1.618e-08	%
Sma3	Biosynthesis of plant hormones	01070	1.618e-08	%
Sma3	Metabolic pathways	01100	1.618e-08	%
Sma3	Biosynthesis of secondary metabolites	01110	1.618e-08	%

Source	Gene names
Sma3	CHLREDRAFT_195953; FUM-1; FUM1; MICPUCDRAFT_46951; MICPUN_58123; OSTLU_86934; Ot04g01220; PHATRDRAFT_19708; THAPSDRAFT_22464;

Source	GOs	Term	Type	Identity
Sma3	fumarate hydratase activity	GO:0004333	Molecular Function	-
Sma3	hydro-lyase activity	GO:0016836	Molecular Function	-
Sma3	generation of precursor metabolites and energy	GO:0006091	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Fumarate lyase	IPR000362	-	-
Sma3	Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain	IPR004646	-	-
Sma3	Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain	IPR004647	-	-
Sma3	Iron-dependent fumarate hydratase	IPR011167	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: D8UCM0

Fln msg: your sequence is shorter than subject: 135 - 527

Fln protein: SGLGLPQYFKDHIVYYAGPAKTPEGHASGSFGPTTAGRMDPYIDTFMAHGGSMISLAKGNRSAQVANACKQYKGFYLGSIGGTAASLASSCIKKVEVLDFPELGMEAVWKIDVENFPCFILIDHNGNDFFKGLI*

Protein Length: 136

Fln nts: AATCGGGCCTCGGTCTGCCGCAGTACTTCAAGGACCACATTGTCTACTACGCAGGCCCAGCCAAGACTCCTGAGGGTCATGCCAGTGGCTCGTTTGGACCAACCACTGCGGGACGAATGGACCCTTATATCGACACCTTCATGGCACATGGTGGTTCGATGATCTCCCTGGCCAAGGGCAACCGCTCAGCACAGGTTGCCAATGCCTGCAAGCAGTACAAGGGCTTCTATCTGGGCTCCATCGGAGGAACGGCGGCTTCGCTCGCCTCCAGCTGTATCAAGAAGGTTGAGGTGCTCGACTTTCCCGAACTTGGTATGGAAGCTGTGTGGAAGATCGACGTTGAAAACTTTCCTTGCTTCATTCTCATCGATCACAATGGAAATGACTTCTTCAAGGGTTTGATCTAA___TCGACGAAGC

Fln Alignment:

HLKU4M004H9P6E___SGLGLPQYFKDHIVYYAGPAKTPEGHASGSFGPTTAGRMDPYIDTFMAHGGSMISLAKGNRSAQVANACKQYKGFYLGSIGGTAASLASSCIKKVEVLDFPELGMEAVWKIDVENFPCFILIDHNGNDFFK
D8UCM0________________AGQGLPQYIKDHIIYYAGPAKTPEGYASGSFGPTTAGRMDSYVDGFMAAGGSLVTLAKGNRSKVVTEACKKHGGFYLGSIGGPAAILAQNCIKKVEVLEYPELGMEAIWKIDVVDFPAFIVVDNKGNDFFK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain