SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene152300

Length: 485 nt

UniGene Fasta

>sp_v3.0_unigene152300
CACGATGAGCGCCGAAGAAGGTGTTGTTGCCGCCGAAGAGAAGAAAGTTGCTCGTGCTCCTGCCACAGTGAAGGATGTCTCTGCTGAGGTTTTCATTAAAGAGTACGCTTCCCATTTGAAGCGCAGTGGGAAACTCTCCCTCCCCAAATGGGTTGACCTTGTGAAGACTGGCTCCCACAAGGAGCTTGCTCCATATGACCCCGATTGGTACTTCGTTCGAGCTGCTTCCCTTGCCCGCCATGTGTACCTCCGTGGAGGGACCGGTGTTGGAGGCTTCCGTACCGTGTACGGACATGCTTCTCGCCGTGGTACTAAGCGCTCCCACTTCGCCCTTGCTTCTGGTGGTCTGATTCGCCACATCTTGCAACAACTCGAAAAGGCCAAGGTGGTCGAGAAGGCTCCTCGTGGTGGTCGAAGAATTACTTCTACTGGACGTCGTGACCTCGATCGTATTGCTGGTAAAATTCGGAATGCTGCTCGCAAAT

Ace file of the UniGene sp_v3.0_unigene152300

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	40S ribosomal protein S19-3 n=2 Tax=Phytophthora infestans RepID=D0NBZ4_PHYIT	-	-	7.0e-32	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%
Sma3	40S ribosomal protein S19	-	-	3.212e-17	-

Source	Gene names
Sma3	At3g02080; At5g15520; At5g61170; CHLREDRAFT_141798; CT189; F1C9.13; GSVIVT00016251001; GSVIVT00030059001; LOC_Os03g31090; LOC_Os03g31134; MICPUCDRAFT_49693; MICPUN_107171; OSTLU_44019; Os03g0424500; Os03g0424800; Os03g31090; Os03g31130; OsI_12120; OsI_121

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S19e	IPR001266	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Ribosomal protein S19e, conserved site	IPR018277	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G02080.1	Ribosomal protein S19e family protein chr3:364138-365161 REVERSE LENGTH=143	9.99967e-42	65%
RefSeq	Arabidopsis thaliana	NP_186857.1	40S ribosomal protein S19-1 [Arabidopsis thaliana]	1.99993e-41	65%
RefSeq	Populus trichocarpa	XP_002323893.1	predicted protein [Populus trichocarpa]	2.0e-39	60%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKW9

Fln msg: STOP codon was not found. Distance to subject end: 1 aas,

Fln protein: MSAEEGVVAAEEKKVARAPATVKDVSAEVFIKEYASHLKRSGKLSLPKWVDLVKTGSHKELAPYDPDWYFVRAASLARHVYLRGGTGVGGFRTVYGHASRRGTKRSHFALASGGLIRHILQQLEKAKVVEKAPRGGRRITSTGRRDLDRIAGKIRNAARK

Protein Length: 161

Fln nts: CACG_-_ATGAGCGCCGAAGAAGGTGTTGTTGCCGCCGAAGAGAAGAAAGTTGCTCGTGCTCCTGCCACAGTGAAGGATGTCTCTGCTGAGGTTTTCATTAAAGAGTACGCTTCCCATTTGAAGCGCAGTGGGAAACTCTCCCTCCCCAAATGGGTTGACCTTGTGAAGACTGGCTCCCACAAGGAGCTTGCTCCATATGACCCCGATTGGTACTTCGTTCGAGCTGCTTCCCTTGCCCGCCATGTGTACCTCCGTGGAGGGACCGGTGTTGGAGGCTTCCGTACCGTGTACGGACATGCTTCTCGCCGTGGTACTAAGCGCTCCCACTTCGCCCTTGCTTCTGGTGGTCTGATTCGCCACATCTTGCAACAACTCGAAAAGGCCAAGGTGGTCGAGAAGGCTCCTCGTGGTGGTCGAAGAATTACTTCTACTGGACGTCGTGACCTCGATCGTATTGCTGGTAAAATTCGGAATGCTGCTCGCAAAT

Fln Alignment:

HLKU4M004IIC58___TVKDVSAEVFIKEYASHLKRSGKLSLPKWVDLVKTGSHKELAPYDPDWYFVRAASLARHVYLXXXXXXXXXXXXXXHASRRGTKRSHFALASGGLIRHILQQLEKAKVVEKAPXXXXXXXXXXXXDLDRIAGKIRNAA
A9NKW9________________TVKDVSPHEFVTAYAAHLKRSGKIELPHWTDLVKTATFKELAPYDPDWYYVRAASMARKIYLRKGIGVGAFSKIYGGRQRNGARPPHFCKSSGSIARHVLQQLEKMNIVEMDPNGGRRITSSGQRDLDQVAGRIAVAA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain