SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene152263

Length: 373 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene152263
GATCAACAAAGATTAATCTTTGCTGGAAAGCAGCTTGAAGACGGCAGAACACTCGCCGATTATAACATCCAAAAAGAATCCACACTCCACTTGGTCCTTCGGCTGAGAGGAGGAACCAAATGTAATTTTACAGGTTGCGCCAAAAAGGCCGCCGTCATCGTTGGAGATTGTAAATTCTGTGAAAAGAAATACTGTTCCATACATCGACTGCCAGAAACCCACGCCTGTGTAAATTTATCGCAATGTCGGCAACTGAGTTTCGACAAGAACAAAGAGAAACTCATCAACGAAAAATGTGTCGCTGTTAAAGTGCATTAGTCATCTGTTATGGCCGTGTACAAATAAATTCCTGAACATCTTGAACTAAATCTAG

Ace file of the UniGene sp_v3.0_unigene152263 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ubiquitin/ribosomal protein L40 fusion protein [Dictyostelium discoideum AX4] sp\|P14794.2\|RL40_DICDI RecName: Full=Ubiquitin-60S ribosomal protein L40; AltName: Full=Ubiquitin A-52 residue ribosomal protein fusion product 1; Contains: RecName: Full=Ubiqui	-	-	4.0e-15	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%

Source	Gene names
Sma3	ACU2; AT5G03240; At1g55060; At2g36170; At4g02890; At4g05050; At4g05320; At5g03240; At5g20620; B1472F02.6; EgUbi; FUBI1; GSVIVT00006610001; GSVIVT00027151001; GSVIVT00028185001; GSVIVT00035709001; GSVIVT00037199001; GUBQ1; GUbB1; GUbB2; H0303G06.8; LOC_Os0

Source	GOs	Term	Type	Identity
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	cytoskeleton	GO:0005856	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein modification process	GO:0006464	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin	IPR000626	-	-
Sma3	Ribosomal protein 60S	IPR001813	-	-
Sma3	Ribosomal protein L40e	IPR001975	-	-
Sma3	Ribosomal protein S27a	IPR002906	-	-
Sma3	Actin-like	IPR004000	-	-
Sma3	Actin, conserved site	IPR004001	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G23410.1	Ribosomal protein S27a / Ubiquitin family protein chr1:8314940-8315410 FORWARD LENGTH=156	3.0e-20	46%
RefSeq	Arabidopsis thaliana	NP_173755.1	40S ribosomal protein S27a-1 [Arabidopsis thaliana]	4.0e-20	46%
RefSeq	Populus trichocarpa	XP_002338082.1	predicted protein [Populus trichocarpa]	1.0e-19	100%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LP57

Fln msg: your sequence is shorter than subject: 106 - 128

Fln protein: DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTKCNFTGCAKKAAVIVGDCKFCEKKYCSIHRLPETHACVNLSQCRQLSFDKNKEKLINEKCVAVKVH*

Protein Length: 107

Fln nts: GATCAACAAAGATTAATCTTTGCTGGAAAGCAGCTTGAAGACGGCAGAACACTCGCCGATTATAACATCCAAAAAGAATCCACACTCCACTTGGTCCTTCGGCTGAGAGGAGGAACCAAATGTAATTTTACAGGTTGCGCCAAAAAGGCCGCCGTCATCGTTGGAGATTGTAAATTCTGTGAAAAGAAATACTGTTCCATACATCGACTGCCAGAAACCCACGCCTGTGTAAATTTATCGCAATGTCGGCAACTGAGTTTCGACAAGAACAAAGAGAAACTCATCAACGAAAAATGTGTCGCTGTTAAAGTGCATTAG___TCATCTGTTATGGCCGTGTACAAATAAATTCCTGAACATCTTGAACTAAATCTAG

Fln Alignment:

HLKU4M004IYI92___DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG-TKCNFTGCAKKAAVIVGDCKFCEKKYCSIH
B8LP57________________DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARK---YNQDKMICRKCYARLH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain