SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene152190

Length: 326 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene152190
AATTGAATCATCTATCAACTCCGTCCGTATCAGTGTCTGTATCAAACAAGCGGATGACCTCGAAAGACTTCTTTGCAAGAAATTCGTACGTTTCTTATGCCAACGTGCTGAACACTTCATCATTTTACGTAGAAGACCAGTAGAGGGCTACGATATCAGTTTCTTGGTTACCAACTTCCACACAGAGCAATTCCTCAAGCACAAATTGGTGGACTTCATTATTCAATTTATGGAAGATATCGATAAGGAAATCAGTGAAATGAAGATTTCTGTCAACGCCAGAGCTCGTATCACCGCTCAGGAGTTCTTGAAGGAGTTCGTCTAGA

Ace file of the UniGene sp_v3.0_unigene152190 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Actin related protein 2/3 complex subunit 4 n=1 Tax=Suberites domuncula RepID=A3QX09_SUBDO	-	-	5.00264e-43	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%

Source	Gene names
Sma3	ARPC4; AT4g14150; At4g14147; CHLREDRAFT_115207; CHLREDRAFT_98121; GSVIVT00038837001; LOC_Os03g63090; OSJNBb0043P23.1; OSJNBb0096M04.125; OSTLU_86040; Os03g0848300; OsI_14322; OsJ_13363; PHYPADRAFT_169316; POPTRDRAFT_827538; RCOM_1018440; arp; dl3115c;

Source	GOs	Term	Type	Identity
Sma3	cytoskeleton	GO:0005856	Cellular Component	-
Sma3	microtubule associated complex	GO:0005875	Cellular Component	-
Sma3	microtubule motor activity	GO:0003777	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	microtubule-based movement	GO:0007018	Biological Process	-
Sma3	actin filament polymerization	GO:0030041	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Kinesin, motor domain	IPR001752	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	ARP23 complex 20kDa subunit	IPR008384	-	-
Sma3	Kinesin-related conserved domain	IPR010544	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G14147.2	-	7.0e-32	67%
RefSeq	Arabidopsis thaliana	NP_001031632.1	actin related protein 2/3 complex, subunit 4 [Arabidopsis thaliana]	4.2039e-45	65%
RefSeq	Populus trichocarpa	XP_002328858.1	predicted protein [Populus trichocarpa]	0.0	67%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ADE5

Fln msg: your sequence is shorter than subject: 108 - 169

Fln protein: IESSINSVRISVCIKQADDLERLLCKKFVRFLCQRAEHFIILRRRPVEGYDISFLVTNFHTEQFLKHKLVDFIIQFMEDIDKEISEMKISVNARARITAQEFLKEFV*

Protein Length: 109

Fln nts: AATTGAATCATCTATCAACTCCGTCCGTATCAGTGTCTGTATCAAACAAGCGGATGACCTCGAAAGACTTCTTTGCAAGAAATTCGTACGTTTCTTATGCCAACGTGCTGAACACTTCATCATTTTACGTAGAAGACCAGTAGAGGGCTACGATATCAGTTTCTTGGTTACCAACTTCCACACAGAGCAATTCCTCAAGCACAAATTGGTGGACTTCATTATTCAATTTATGGAAGATATCGATAAGGAAATCAGTGAAATGAAGATTTCTGTCAACGCCAGAGCTCGTATCACCGCTCAGGAGTTCTTGAAGGAGTTCGTCTAG___A

Fln Alignment:

HLKU4M004JZ5QR___IESSINSVRISVCIKQADDLERLLCKKFVRFLCQRAEHFIILRRRPVEGYDISFLVTNFHTEQFLKHKLVDFIIQFMEDIDKEISEMKISVNARARITAQEFLKEF
D5ADE5________________IETSINSLRISIKVKQADELENILAKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEEMYKHKLIDFIVQFMEDIDKEISELKLSVNTRGRLVAKEFLKQF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain