SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene152157

Length: 336 nt

UniGene Fasta

>sp_v3.0_unigene152157
TAAGACTGTGGACGCGGAGCAGCAAGTCCGCCGTCTTGGCATGGTTGCGGGTGGCTCCGGTATCACGCCCATGCTGCAAGTGGTGCGCGAAATTCTTCATAATCCTGCGGACAAGACTGAGGTCTACCTCATGTTCGGCAACGTCACTGAGCCAGATATCCTGCTCAGAGAAGAAATCGAGCGCTACTCAAAGGAACATGCGGCCCGCTTCAAGGTCCTCTTTGTCCTTGATAAGCCCTCCGAAGGCTGGACTGGCGGTTCCGGCTACGTGACTGTCGACATGATGCAGAAGAACCTGCCCCCAGCAGCAGCCGACAGCCTCTTACTCTTCTGTGG

Ace file of the UniGene sp_v3.0_unigene152157

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NADH-cytochrome b5 reductase 2 [Xenopus laevis] sp\|Q5PQA4.1\|NB5R2_XENLA RecName: Full=NADH-cytochrome b5 reductase 2; Short=b5R.2 gb\|AAH87294.1\| Cyb5r2 protein [Xenopus laevis]	-	-	2.0e-26	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	55%
Sma3	Cytochrome b5 reductase	-	-	1.901e-11	-

Source	ECs	Term	Type	e value	Identity
Sma3	Cytochrome-b5 reductase.	EC:1.6.2.2	-	1.191e-14	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Amino sugar and nucleotide sugar metabolism	00520		1.191e-14	%

Source	Gene names
Sma3	AT5G17770; At5g17770; CBR1A; CBR1B; GSVIVT00017362001; GSVIVT00033711001; MVA3.13; NFR; NFR II; NIA2; NR2; OJ1119_H02.12; OSJNBa0085D07.31; OSJNBa0089K24.21; Os01g0174300; Os01g0814900; Os05g0488900; OsI_00597; OsI_00602; OsI_04196; OsI_20413; OsJ_00570;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	cytochrome-b5 reductase activity	GO:0004128	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	nitrate reductase (NADH) activity	GO:0009703	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	molybdenum ion binding	GO:0030151	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	-
Sma3	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	electron transport chain	GO:0022900	Biological Process	-
Sma3	nitrate assimilation	GO:0042128	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Oxidoreductase, molybdopterin-binding domain	IPR000572	-	-
Sma3	Cytochrome b5	IPR001199	-	-
Sma3	Oxidoreductase FAD/NAD(P)-binding	IPR001433	-	-
Sma3	Flavoprotein pyridine nucleotide cytochrome reductase	IPR001709	-	-
Sma3	NADH:cytochrome b5 reductase (CBR)	IPR001834	-	-
Sma3	Basic-leucine zipper domain	IPR004827	-	-
Sma3	Moybdenum cofactor oxidoreductase, dimerisation	IPR005066	-	-
Sma3	Oxidoreductase, FAD-binding domain	IPR008333	-	-
Sma3	Eukaryotic molybdopterin oxidoreductase	IPR008335	-	-
Sma3	bZIP transcription factor, bZIP-1	IPR011616	-	-
Sma3	Nitrate reductase NADH dependent	IPR012137	-	-
Sma3	Ferredoxin reductase-type FAD-binding domain	IPR017927	-	-
Sma3	Cytochrome b5, heme-binding site	IPR018506	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G17770.1	ATCBR, CBR1, CBR NADH:cytochrome B5 reductase 1 chr5:5864543-5866495 REVERSE LENGTH=281	5.0e-31	50%
RefSeq	Arabidopsis thaliana	NP_197279.1	cytochrome-b5 reductase [Arabidopsis thaliana]	6.0e-31	50%
RefSeq	Populus trichocarpa	XP_002328090.1	predicted protein [Populus trichocarpa]	7.0e-34	53%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NRC8

Fln msg: Distance to subject end: 25 aas, your sequence is shorter than subject: 111 - 281

Fln protein: KTVDAEQQVRRLGMVAGGSGITPMLQVVREILHNPADKTEVYLMFGNVTEPDILLREEIERYSKEHAARFKVLFVLDKPSEGWTGGSGYVTVDMMQKNLPPAAADSLLLFC

Protein Length: 112

Fln nts: TAAGACTGTGGACGCGGAGCAGCAAGTCCGCCGTCTTGGCATGGTTGCGGGTGGCTCCGGTATCACGCCCATGCTGCAAGTGGTGCGCGAAATTCTTCATAATCCTGCGGACAAGACTGAGGTCTACCTCATGTTCGGCAACGTCACTGAGCCAGATATCCTGCTCAGAGAAGAAATCGAGCGCTACTCAAAGGAACATGCGGCCCGCTTCAAGGTCCTCTTTGTCCTTGATAAGCCCTCCGAAGGCTGGACTGGCGGTTCCGGCTACGTGACTGTCGACATGATGCAGAAGAACCTGCCCCCAGCAGCAGCCGACAGCCTCTTACTCTTCTGTGG

Fln Alignment:

HLKU4M004JEZEA___QVRRLGMVAGGSGITPMLQVVREILHNPADKTEVYLMFGNVTEPDILLREEIERYSKEHAARFKVLFVLDKPSEGWTGGSGYVTVDMMQKNLPPAAADSLLLFC
A9NRC8________________QVRAFGMLAGGSGITPMFQVTRAILENPKDKTNVYLIYGNVTYEDILLKDELDSLMKNYPGRFRVYHVLNQPPEGWTGGVGFVSKEMIQTHCPAPASDIQILRC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain