SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene152071

Length: 207 nt

UniGene Fasta

>sp_v3.0_unigene152071
CTGAACCTCCCCTAGATGCCGAAGCCTCGTCGTAACTTCAGTAAGACAGTCAGCACTCCCCGTCGCCCCTGGGAGAAGGAGCGTCTCGATCACGAGCTCAAACTCCTGGGTGAGTATGGCCTTCGCTGCAAGCGTGAGGTGTGGCGCGTCCACACTGCCTTGACAAAGATCCGTAAGGCGGCTCGTGAGTTGCTGACTCTCGACGAG

Ace file of the UniGene sp_v3.0_unigene152071

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	40S ribosomal protein S9-1 n=1 Tax=Phytophthora infestans T30-4 RepID=D0NCA2_PHYIT	-	-	1.0e-18	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Sma3	40S ribosomal protein S9	-	-	4.799e-26	-

Source	Gene names
Sma3	At5g15200; At5g39850; CHLREDRAFT_195593; F8M21_90; GSVIVT00000124001; GSVIVT00020932001; GSVIVT00037003001; LOC_Os03g05980; LOC_Os11g38949; MICPUCDRAFT_49506; MICPUN_93744; MYH19.1; MYH19.10; OSTLU_94716; Os03g0154700; Os11g0602500; Os11g0602600; OsI_1006

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	small ribosomal subunit	GO:0015935	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	rRNA binding	GO:0019843	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S4/S9, N-terminal	IPR001912	-	-
Sma3	RNA-binding S4 domain	IPR002942	-	-
Sma3	Ribosomal protein S4/S9, eukaryotic/archaeal	IPR005710	-	-
Sma3	Ribosomal protein S4, conserved site	IPR018079	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G39850.1	Ribosomal protein S4 chr5:15950053-15951171 FORWARD LENGTH=197	3.0e-25	74%
RefSeq	Arabidopsis thaliana	NP_198801.1	40S ribosomal protein S9-2 [Arabidopsis thaliana]	4.0e-25	74%
RefSeq	Populus trichocarpa	XP_002317362.1	predicted protein [Populus trichocarpa]	2.0e-23	72%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LND2

Fln msg: Distance to subject end: 131 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 64 - 197

Fln protein: MPKPRRNFSKTVSTPRRPWEKERLDHELKLLGEYGLRCKREVWRVHTALTKIRKAARELLTLDE

Protein Length: 65

Fln nts: CTGAACCTCCCCTAG_-_ATGCCGAAGCCTCGTCGTAACTTCAGTAAGACAGTCAGCACTCCCCGTCGCCCCTGGGAGAAGGAGCGTCTCGATCACGAGCTCAAACTCCTGGGTGAGTATGGCCTTCGCTGCAAGCGTGAGGTGTGGCGCGTCCACACTGCCTTGACAAAGATCCGTAAGGCGGCTCGTGAGTTGCTGACTCTCGACGAG

Fln Alignment:

HLKU4M004I764Z___RNFSKTVSTPRRPWEKERLDHELKLLGEYGLRCKREVWRVHTALTKIRKAARELLTLDE
B8LND2________________RNYGKTFKKPRRPYEKERLDAELKLVGEYGLRNKRELWRVQYTLSRIRNAARMLLTLDE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain