SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene151995

Length: 473 nt

UniGene Fasta

>sp_v3.0_unigene151995
CATTGTGTGAGGCATTGATGACGACTCTTTCAGGCAAGACCGCACTGGTTACCGGTTCCACCAGCGGCATTGGCCTGGGCATTGCCCTGAGCCTGGCCAAGGCTGGCGCCAATCTGATCCTCAACGGATTTGGCGATGCATCCAAAGTGATTGCCGAGGTTGAACAGTTCGGCGGCAAGGTTGGCCATCATCCCGCCGACGTCAGCGACCCGGCGCAGATCGCCGACATGATCGCCTACGCCGAGCGCGAATTCGGCGGCGTCGATATTCTGGTCAACAACGCCGGCATCCAGCATGTGGCGCCGGTAGACGAGTTTCCGGTGGAACGCTGGGACTCGATCATCGCCATCAACCTGTCATCGGTGTTTCACAGCACCCGCCTGAGCCTGCCGGGCATGCGCGCCAAGGGCTGGGGCCGAGTGATCAACATCGCCTCGGTGCATGGCCTGGTGGGTTCGACGGGCAAAGCCGCA

Ace file of the UniGene sp_v3.0_unigene151995

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	3-hydroxybutyrate dehydrogenase, putative n=5 Tax=Pseudomonas RepID=Q4KAQ5_PSEF5	-	-	0.0	90%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	39%

Source	Gene names
Sma3	CHLREDRAFT_139865; OsI_02453; POPTRDRAFT_588720;

Source	GOs	Term	Type	Identity
Sma3	3-hydroxybutyrate dehydrogenase activity	GO:0003858	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Porin, Gram-negative type	IPR001702	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	Coenzyme A transferase binding site	IPR004163	-	-
Sma3	Coenzyme A transferase active site	IPR004164	-	-
Sma3	Coenzyme A transferase	IPR004165	-	-
Sma3	Divalent ion symporter	IPR004680	-	-
Sma3	Autotransporter beta-domain	IPR005546	-	-
Sma3	3-hydroxyacyl-CoA dehydrogenase, C-terminal	IPR006108	-	-
Sma3	3-hydroxyacyl-CoA dehydrogenase, NAD binding	IPR006176	-	-
Sma3	3-hydroxybutyrate dehydrogenase	IPR011294	-	-
Sma3	3-oxoacid CoA-transferase, subunit B	IPR012791	-	-
Sma3	3-oxoacid CoA-transferase, subunit A	IPR012792	-	-
Sma3	Dehydrogenase, multihelical	IPR013328	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PR50

Fln msg: Distance to subject end: 94 aas, your sequence is shorter than subject: 157 - 328

Fln protein: LCEALMTTLSGKTALVTGSTSGIGLGIALSLAKAGANLILNGFGDASKVIAEVEQFGGKVGHHPADVSDPAQIADMIAYAEREFGGVDILVNNAGIQHVAPVDEFPVERWDSIIAINLSSVFHSTRLSLPGMRAKGWGRVINIASVHGLVGSTGKAA

Protein Length: 158

Fln nts: CATTGTGTGAGGCATTGATGACGACTCTTTCAGGCAAGACCGCACTGGTTACCGGTTCCACCAGCGGCATTGGCCTGGGCATTGCCCTGAGCCTGGCCAAGGCTGGCGCCAATCTGATCCTCAACGGATTTGGCGATGCATCCAAAGTGATTGCCGAGGTTGAACAGTTCGGCGGCAAGGTTGGCCATCATCCCGCCGACGTCAGCGACCCGGCGCAGATCGCCGACATGATCGCCTACGCCGAGCGCGAATTCGGCGGCGTCGATATTCTGGTCAACAACGCCGGCATCCAGCATGTGGCGCCGGTAGACGAGTTTCCGGTGGAACGCTGGGACTCGATCATCGCCATCAACCTGTCATCGGTGTTTCACAGCACCCGCCTGAGCCTGCCGGGCATGCGCGCCAAGGGCTGGGGCCGAGTGATCAACATCGCCTCGGTGCATGGCCTGGTGGGTTCGACGGGCAAAGCCGCA

Fln Alignment:

HLKU4M004JYQKF___ALVTGSTSGIGLGIALSLAKAGANLILN---GFGDASKVIAEVEQFGGKVGHHPADVSDPAQIADMIAYAEREFGGVDILVNNAGIQHVAPVDEFPVERWDSIIAINLSSVFHSTRLSLPGMRAKGWGRVINIASVHGLVGSTGKA
C0PR50________________AVVTGASRGIGKAIALSLGRAGCKVLVNYARSIKEAEDVSRQIEAAGGSAIIYGGDMSKEADVEGMFKTAIDSWGTIDILVNNAGITRDTLMMRMTRSQWQDVIDLNLTGVFLCTQAAAKVMMKKRKGRVINIASVVGLTGNIGQA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain