SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene151988

Length: 360 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene151988
AAATCCAGAATTACAAGTGTTCCGACTGTATAACCAGCAATTCTAAAACGGTCGTAACAAAAGCCTGTCCTAAATGCACAGTGGCAGTTTTTAAAATTAGTGGCTGTAATCACATTTCTTGTGCTTGTGGGTCTCACTGGTGCTGGCAATGCCAAACCATGTGCAAAAACTCCGGTGAAGTTTATGAGCATATGCACTCTGTACATGGACGAATTTTCGATGAAGATGTTCCTAATTATGCGGAGGACGAGGAGGACGAGGAGGTATTAGACGACTTTCCCTGGTGATCAGATGTTCCCCTCCCAGGATTAATTATATTGGAATAATTGTACAGCTGTTTATAGTCTTTTCAATAAATAA

Ace file of the UniGene sp_v3.0_unigene151988 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	sp=Putative E3 ubiquitin-protein ligase ARI4; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	53%

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G27720.1	ARI4, ATARI4 IBR domain containing protein chr3:10271876-10273621 FORWARD LENGTH=493	3.0e-11	53%
RefSeq	Arabidopsis thaliana	NP_189409.1	IBR domain containing protein [Arabidopsis thaliana]	4.0e-11	53%
RefSeq	Populus trichocarpa	XP_002307067.1	predicted protein [Populus trichocarpa]	2.0e-12	46%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LVW9

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 155 aas, your sequence is shorter than subject: 95 - 529

Fln protein: IQNYKCSDCITSNSKTVVTKACPKCTVAVFKISGCNHISCACGSHWCWQCQTMCKNSGEVYEHMHSVHGRIFDEDVPNYAEDEEDEEVLDDFPW*

Protein Length: 96

Fln nts: AAATCCAGAATTACAAGTGTTCCGACTGTATAACCAGCAATTCTAAAACGGTCGTAACAAAAGCCTGTCCTAAATGCACAGTGGCAGTTTTTAAAATTAGTGGCTGTAATCACATTTCTTGTGCTTGTGGGTCTCACTGGTGCTGGCAATGCCAAACCATGTGCAAAAACTCCGGTGAAGTTTATGAGCATATGCACTCTGTACATGGACGAATTTTCGATGAAGATGTTCCTAATTATGCGGAGGACGAGGAGGACGAGGAGGTATTAGACGACTTTCCCTGGTGATCAGATGTTCCCCTCCCAGGATTAATTATATTGGAATAATTGTACAGCTGTTTATAGTCTTTTCAATAAATAA

Fln Alignment:

HLKU4M004I2ZHN___KCSD-CITSNSKTVVTKACPKCTVAVFKISGCNHISCACGSHWCWQC
Q9LVW9________________KCEDESETVNWMTVNTKLCPKCSKPIQKRDGCNHMTCKCGQHFCWLC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain