SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene151907

Length: 214 nt

UniGene Fasta

>sp_v3.0_unigene151907
ACAGGAAGAATCATTAGAACTATTTGCGTTTTGAATCATCCCATCCCCAACACCAGCAAAGAGCACTCCCTTCAAATCATCCTCCCTCAAAGAGAGCTCAAGAGAAGAAACGACATCTACATCATGTGCATTTCTGGAGACCACAACGTTGTCCCCAAGGGCAAGTACATGGCCATCGTTTCCACAAACATCGAAACCGCCAACCCCGAAGCCG

Ace file of the UniGene sp_v3.0_unigene151907

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Rab GDP dissociation inhibitor alpha n=1 Tax=Polysphondylium pallidum RepID=D3AVV8_POLPA	-	-	2.0e-19	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%
Sma3	GDP dissociation inhibitor	-	-	2.325e-15	-

Source	Gene names
Sma3	BcGDI; CHLREDRAFT_191319; F17I14_260; GDI; GDI1; GDIC1; GSVIVT00004863001; GSVIVT00010042001; GSVIVT00034778001; LOC_Os03g16900; MICPUCDRAFT_37124; Os03g0277000; OsI_10987; OsJ_10334; PHYPADRAFT_109987; PHYPADRAFT_214330; PHYPADRAFT_218986; RCOM_0886040;

Source	GOs	Term	Type	Identity
Sma3	Rab GDP-dissociation inhibitor activity	GO:0005093	Molecular Function	-
Sma3	protein transport	GO:0015031	Biological Process	-
Sma3	regulation of GTPase activity	GO:0043087	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Rab GDI protein	IPR000806	-	-
Sma3		IPR002005	-	-
Sma3	GDP dissociation inhibitor	IPR018203	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G59920.1	ATGDI2, GDI2 RAB GDP dissociation inhibitor 2 chr3:22135157-22138221 FORWARD LENGTH=444	8.0e-24	53%
RefSeq	Arabidopsis thaliana	NP_191551.1	RAB GDP dissociation inhibitor 2 [Arabidopsis thaliana]	1.0e-23	53%
RefSeq	Populus trichocarpa	XP_002331641.1	predicted protein [Populus trichocarpa]	4.0e-23	54%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUP6

Fln msg: Distance to subject end: 79 aas, your sequence is shorter than subject: 71 - 299

Fln protein: TGRIIRTICVLNHPIPNTSKEHSLQIILPQRELKRRNDIYIMCISGDHNVVPKGKYMAIVSTNIETANPEA

Protein Length: 72

Fln nts: ACAGGAAGAATCATTAGAACTATTTGCGTTTTGAATCATCCCATCCCCAACACCAGCAAAGAGCACTCCCTTCAAATCATCCTCCCTCAAAGAGAGCTCAAGAGAAGAAACGACATCTACATCATGTGCATTTCTGGAGACCACAACGTTGTCCCCAAGGGCAAGTACATGGCCATCGTTTCCACAAACATCGAAACCGCCAACCCCGAAGCCG

Fln Alignment:

HLKU4M004J0OLY___GRIIRTICVLNHPIPNTSKEHSLQIILPQRELKRRNDIYIMCISGDHNVVPKGKYMAIVSTNIETANPE
A9NUP6________________GKVSRAICIMSHPIPNTNDSQSVQIILPQKQLGRKSDMYVFCCSHSHNVAPKGKYIAFVSTEAETDQPE

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain