SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene151884

Length: 184 nt

UniGene Fasta

>sp_v3.0_unigene151884
GAGATTTGTACTCTGTCTCTGATCTGTTGGAGCCAGTCACTGATGGTCGCACTGACAAGTGCTTCATCTCCAAGTCCTACGATGCTACCTCTCACTTTGAGACTGCTGCCAATGATGTGTTGTCTCTGTACCATCGCATCACTGGTACTGAGCTGGACATGAACATCTCTGCGGACATGACTGA

Ace file of the UniGene sp_v3.0_unigene151884

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Rab GDP dissociation inhibitor alpha putative n=1 Tax=Albugo laibachii Nc14 RepID=F0W0X7_9STRA	-	-	3.0e-15	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%
Sma3	Probable RabGDI	-	-	5.361e-06	-

Source	Gene names
Sma3	PHATRDRAFT_14827; RabGDI; THAPSDRAFT_26136;

Source	InterPros	Term	Type	Identity
Sma3	Rab GDI protein	IPR000806	-	-
Sma3		IPR002005	-	-
Sma3	GDP dissociation inhibitor	IPR018203	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G44100.1	ATGDI1, AT-GDI1, GDI1 guanosine nucleotide diphosphate dissociation inhibitor 1 chr2:18241804-18244864 FORWARD LENGTH=445	7.0e-13	50%
RefSeq	Arabidopsis thaliana	NP_181938.1	guanosine nucleotide diphosphate dissociation inhibitor 1 [Arabidopsis thaliana]	9.0e-13	50%
RefSeq	Populus trichocarpa	XP_002310371.1	predicted protein [Populus trichocarpa]	4.0e-12	49%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUP6

Fln msg: STOP codon was not found. Distance to subject end: 4 aas, your sequence is shorter than subject: 60 - 299

Fln protein: DLYSVSDLLEPVTDGRTDKCFISKSYDATSHFETAANDVLSLYHRITGTELDMNISADMT

Protein Length: 61

Fln nts: GAGATTTGTACTCTGTCTCTGATCTGTTGGAGCCAGTCACTGATGGTCGCACTGACAAGTGCTTCATCTCCAAGTCCTACGATGCTACCTCTCACTTTGAGACTGCTGCCAATGATGTGTTGTCTCTGTACCATCGCATCACTGGTACTGAGCTGGACATGAACATCTCTGCGGACATGACTGA

Fln Alignment:

HLKU4M004IOSQR___YSVSDLLEPVTDGRTDKCFISKSYDATSHFETAANDVLSLYHRITGTELDMNI
A9NUP6________________FDTYDIYEPVNEPSLDNCFISKSYDATTHFETTVQDVLAMYTQITGKVLDLSV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain