SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene151772

Length: 494 nt

UniGene Fasta

>sp_v3.0_unigene151772
TTCCAATTGGATTTATTTCCCAGTATTTGATCTAAAATCCAACAGGATGACTTCCGAGGAAGATCAAAAGTTAAATCGAAATTGTAAAGTCGCGCATAGGAGACTTTCCTGACTTCCCAAAACCTGGAATCTTATTCAAAGACCTCTTTACAGCGCTGACCCACGGCGAGGTTTGCCAGGCCCTCAAACAGCTGTTCCTCTCGCACGTGCAAAGGGAATGTCCCAACATTGATGTGGTGGTTGGCCTGGAGGCGAGAGGTTTCCTCTTTGGCTTCCAAATAGCTGCCGACCTAGGCCTCCCGTTCGTGCCGATCCGGAAGAAGGGCAAGTTGCCAGGGGAACTTTACAGTCAGGAATATGCTCTGGAGTATGGAACGGACCAGTTCGAGATCCAAAAGAACGCGATAAAGCCCGGACAAAAGGTTCTTATCGTGGACGACCTGTTGGCAACCGGAGGCACGATGGAGGCAGCTAGTCTACTCATAGCGAAATGC

Ace file of the UniGene sp_v3.0_unigene151772

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Adenine phosphoribosyltransferase n=1 Tax=Aedes aegypti RepID=Q1HQP5_AEDAE	-	-	0.0	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%
Sma3	Adenine phosphoribosyltransferase 1	-	-	1.466e-15	-

Source	ECs	Term	Type	e value	Identity
Sma3	Adenine phosphoribosyltransferase.	EC:2.4.2.7	-	9.572e-18	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Purine metabolism	00230		9.572e-18	%
Sma3	Metabolic pathways	01100		9.572e-18	%

Source	Gene names
Sma3	APT; APT1; AT4g12440; AT4g22570; At1g27450; At4g12440; At4g22570; CHLREDRAFT_145209; F17L21.24; GSVIVT00007310001; GSVIVT00014948001; HvAPRT1; LOC_Os12g39860; LOC_Os12g40130; MICPUCDRAFT_51070; MtN30; OJ1753_E03.106; OJ2055_H10.12-1; OJ2055_H10.12-2; Os02

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	adenine phosphoribosyltransferase activity	GO:0003999	Molecular Function	-
Sma3	transferase activity, transferring glycosyl groups	GO:0016757	Molecular Function	-
Sma3	purine ribonucleoside salvage	GO:0006166	Biological Process	-
Sma3	adenine salvage	GO:0006168	Biological Process	-
Sma3	nucleoside metabolic process	GO:0009116	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Phosphoribosyltransferase	IPR000836	-	-
Sma3	Adenine phosphoribosyl transferase	IPR005764	-	-
Sma3	ATP phosphoribosyltransferase, conserved site	IPR018198	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G22570.1	APT3 adenine phosphoribosyl transferase 3 chr4:11882310-11885250 REVERSE LENGTH=183	1.0e-34	47%
RefSeq	Arabidopsis thaliana	NP_849714.1	adenine phosphoribosyltransferase 1 [Arabidopsis thaliana]	4.0e-37	47%
RefSeq	Populus trichocarpa	XP_002329870.1	predicted protein [Populus trichocarpa]	2.0e-36	47%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: C0PQA9

Fln msg: STOP codon was not found. Distance to subject end: 4 aas, Unexpected STOP codon in 5 prime region,

Fln protein: IEIVKSRIGDFPDFPKPGILFKDLFTALTHGEVCQALKQLFLSHVQRECPNIDVVVGLEARGFLFGFQIAADLGLPFVPIRKKGKLPGELYSQEYALEYGTDQFEIQKNAIKPGQKVLIVDDLLATGGTMEAASLLIAKC

Protein Length: 141

Fln nts: TTCCAATTGGATTTATTTCCCAGTATTTGATCTAAAATCCAACAGGATGACTTCCGAGGAAGATCAAAAGTTAAATCGAAATTGTAAAGTCGCGCATAGGAGACTTTCCTGACTTCCCAAAACCTGGAATCTTATTCAAAGACCTCTTTACAGCGCTGACCCACGGCGAGGTTTGCCAGGCCCTCAAACAGCTGTTCCTCTCGCACGTGCAAAGGGAATGTCCCAACATTGATGTGGTGGTTGGCCTGGAGGCGAGAGGTTTCCTCTTTGGCTTCCAAATAGCTGCCGACCTAGGCCTCCCGTTCGTGCCGATCCGGAAGAAGGGCAAGTTGCCAGGGGAACTTTACAGTCAGGAATATGCTCTGGAGTATGGAACGGACCAGTTCGAGATCCAAAAGAACGCGATAAAGCCCGGACAAAAGGTTCTTATCGTGGACGACCTGTTGGCAACCGGAGGCACGATGGAGGCAGCTAGTCTACTCATAGCGAAATGC

Fln Alignment:

HLKU4M004H5JGY___PDFPKPGILFKDLFTALTHGEVCQALKQLFLSHVQRECPNIDVVVGLEARGFLFGFQIAADLGLPFVPIRKKGKLPGELYSQEYALEYGTDQFEIQKNAIKPGQKVLIVDDLLATGGTMEAASLLIAK
C0PQA9________________PDFPKPGIMFQDITTLLLDHKAFRDCIDIFVERYKDK--NISVVAGIEARGFIFGPPIALAIGAKFVPIRKPKKLPGEVISEEYALEYGTDRIEMHVGAVQPGDRTLVVDDLIATGGTLSAAMRLLER

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain