SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene151747

Length: 277 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene151747
ATACATTGTGTCGTCGATGTGGTCGTTCATCATACCATTTTACAAAAACAACAATGTGCTGCTTGCGGATTTCCATCAGCTAAAACACGTAAATTTCAATGGAGTGAAAAAGCTCGTCGCCGAAAAACAACTGGTACTGGTCGAATGAAACATTTAAAGGTAGTCTTTCGTCGATTTCGAAATGGTTTTCGTGAAGGTACATTAGCAAAATCACGTAAATCACATCGACAAACAACTGGTGGTGCAACAACTACAACAGCACCAGCTACAACCAAAT

Ace file of the UniGene sp_v3.0_unigene151747 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ribosomal protein L37 n=1 Tax=Adineta ricciae RepID=Q56J85_ADIRI	-	-	3.0e-25	79%
FL-Next	sp=Ribosomal protein L37; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	58%
Sma3	Ribosomal protein L37	-	-	0.0	-

Source	Gene names
Sma3	At1g52300; At3g16080; GSVIVT00032478001; GSVIVT00034392001; MICPUN_93506; MSL1.12; OJ1293_E04.26; OSTLU_32818; Os02g0111700; Os02g0815000; Os08g0128500; OsI_05548; OsI_09420; OsI_27679; OsJ_05070; OsJ_08855; OsJ_25910; Ot07g04050; P0501G04.27; PHYPADRAFT_

Source	GOs	Term	Type	Identity
Sma3	nucleosome	GO:0000786	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	cytosolic ribosome	GO:0022626	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	rRNA binding	GO:0019843	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Histone H3	IPR000164	-	-
Sma3	Ribosomal protein L37e	IPR001569	-	-
Sma3	Ribosomal protein L37ae/L37e, N-terminal	IPR011331	-	-
Sma3	Ribosomal protein L37e, conserved site	IPR018267	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G16080.1	Zinc-binding ribosomal protein family protein chr3:5454892-5455677 FORWARD LENGTH=95	9.0e-13	61%
RefSeq	Arabidopsis thaliana	NP_175640.1	60S ribosomal protein L37-2 [Arabidopsis thaliana]	1.0e-12	61%
RefSeq	Populus trichocarpa	XP_002304203.1	predicted protein [Populus trichocarpa]	1.0e-15	66%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NJS5

Fln msg: STOP codon was not found. Distance to subject end: 12 aas, atg_distance in limit (1-15): atg_distance = 16, W2: There is no M at the beginning,

Fln protein: IHCVVDVVVHHTILQKQQCAACGFPSAKTRKFQWSEKARRRKTTGTGRMKHLKVVFRRFRNGFREGTLAKSRKSHRQTTGGATTTTAPATTK

Protein Length: 93

Fln nts: ATACATTGTGTCGTCGATGTGGTCGTTCATCATACCATTTTACAAAAACAACAATGTGCTGCTTGCGGATTTCCATCAGCTAAAACACGTAAATTTCAATGGAGTGAAAAAGCTCGTCGCCGAAAAACAACTGGTACTGGTCGAATGAAACATTTAAAGGTAGTCTTTCGTCGATTTCGAAATGGTTTTCGTGAAGGTACATTAGCAAAATCACGTAAATCACATCGACAAACAACTGGTGGTGCAACAACTACAACAGCACCAGCTACAACCAAAT

Fln Alignment:

HLKU4M004ITN8U___LQKQQCAACGFPSAKTRKFQWSEKAXXXXXXXXXRMKHLKVVFRRFRNGFREGTLAKSRK
A9NJS5________________IQKSRCSACAYPSKRIRKYNWSVKAIRRKTTGTGRMRYLRHMPRRFKNNFREGTQATPKK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain