SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene151706

Length: 515 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene151706
AAGATGGCAAGTACAAGGAGAACAAGATCCACTGGTGGGAAAGCGTCTACGGCTTCAACATGTCCACCATTCGCGATCTGGCTCTGAAGGAGCCCATCGTCGATGTTGTCGACTCGTCAGCCGTCAAGACCACCGTGGCTGCGGGCTGGACCCTCGATATGAATACCATCAAGATCGAGGATCTCGACTTCGAGTTCAGATTCCAGCTCCAAGCACTTTGTGACGATTATCTCCATGCTCTCGTCGTCTACTTCGACATTGAATTCTCAGCCTGCCACAAGCCCGTTCGCTTTTCCACAGGTCCCTTCTCCGACTACACCCATTGGAAGCAAACCGTCTTCTATCTCAAGGACGTCCTCATGATCACCAAGGGTGACACCATCGACTTCAAGATGCACGTTTCTCCCAACGAAAAGAACAACCGCGATATGAACATCAACCTCGACTACGACTTCACGGGTCGTTACGGTCATCTTCGTGCTTCGCTCGACTATATCCTTCGGTAATTCATTGAC

Ace file of the UniGene sp_v3.0_unigene151706 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	arginine N-methyltransferase 1-like protein [Callithrix jacchus]	-	-	7.00649e-45	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	46%
Sma3	Protein arginine N-methyltransferase	-	-	2.182e-11	-

Source	ECs	Term	Type	e value	Identity
Sma3	Transferases, Transferring one-carbon groups, Methyltransferases.	EC:2.1.1.-	-	3.564e-09	-

Source	KEGGs	Term	e value	Identity
Sma3	Ubiquinone and other terpenoid-quinone biosynthesis	00130	3.564e-09	%
Sma3	Tetracycline biosynthesis	00253	3.564e-09	%
Sma3	Histidine metabolism	00340	3.564e-09	%
Sma3	Tyrosine metabolism	00350	3.564e-09	%
Sma3	Phenylalanine metabolism	00360	3.564e-09	%
Sma3	Tryptophan metabolism	00380	3.564e-09	%
Sma3	Benzoxazinoid biosynthesis	00402	3.564e-09	%
Sma3	Selenocompound metabolism	00450	3.564e-09	%
Sma3	Biosynthesis of 12-, 14- and 16-membered macrolides	00522	3.564e-09	%
Sma3	Polycyclic aromatic hydrocarbon degradation	00624	3.564e-09	%
Sma3	Methane metabolism	00680	3.564e-09	%
Sma3	Porphyrin and chlorophyll metabolism	00860	3.564e-09	%
Sma3	Carotenoid biosynthesis	00906	3.564e-09	%
Sma3	Phenylpropanoid biosynthesis	00940	3.564e-09	%
Sma3	Flavonoid biosynthesis	00941	3.564e-09	%
Sma3	Anthocyanin biosynthesis	00942	3.564e-09	%
Sma3	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945	3.564e-09	%
Sma3	Isoquinoline alkaloid biosynthesis	00950	3.564e-09	%
Sma3	Insect hormone biosynthesis	00981	3.564e-09	%
Sma3	Biosynthesis of type II polyketide products	01057	3.564e-09	%
Sma3	Biosynthesis of alkaloids derived from shikimate pathway	01063	3.564e-09	%
Sma3	Metabolic pathways	01100	3.564e-09	%
Sma3	Biosynthesis of secondary metabolites	01110	3.564e-09	%

Source	Gene names
Sma3	At2g19670; At4g29510; CHLREDRAFT_205758; F6F22.30; GSVIVT00016598001; OsI_030013; PAM1; PHYPADRAFT_56390; PHYPADRAFT_57235; POPTRDRAFT_418476; POPTRDRAFT_828212; PRMT1; PRMT1.1; PRMT1.2; PRMT1501; PRMT1502; PRMT901; PtrRMT902; RCOM_1048110; T16L4.20;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	methyltransferase activity	GO:0008168	Molecular Function	-
Sma3	protein methyltransferase activity	GO:0008276	Molecular Function	-
Sma3	protein-arginine N-methyltransferase activity	GO:0016274	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-
Sma3	protein methylation	GO:0006479	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Methyltransferase small	IPR007848	-	-
Sma3	Ribosomal L11 methyltransferase, PrmA	IPR010456	-	-
Sma3	Methyltransferase type 11	IPR013216	-	-
Sma3	Methyltransferase type 12	IPR013217	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G29510.1	ATPRMT11, PRMT11, ATPRMT1B, PRMT1B arginine methyltransferase 11 chr4:14491739-14493752 FORWARD LENGTH=390	47%
RefSeq	Arabidopsis thaliana	NP_194680.1	protein arginine N-methyltransferase 1 [Arabidopsis thaliana]	47%
RefSeq	Populus trichocarpa	XP_002309219.1	arginine methyltransferease, partial [Populus trichocarpa]	48%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NV48

Fln msg: your sequence is shorter than subject: 168 - 379

Fln protein: DGKYKENKIHWWESVYGFNMSTIRDLALKEPIVDVVDSSAVKTTVAAGWTLDMNTIKIEDLDFEFRFQLQALCDDYLHALVVYFDIEFSACHKPVRFSTGPFSDYTHWKQTVFYLKDVLMITKGDTIDFKMHVSPNEKNNRDMNINLDYDFTGRYGHLRASLDYILR*

Protein Length: 169

Fln nts: AAGATGGCAAGTACAAGGAGAACAAGATCCACTGGTGGGAAAGCGTCTACGGCTTCAACATGTCCACCATTCGCGATCTGGCTCTGAAGGAGCCCATCGTCGATGTTGTCGACTCGTCAGCCGTCAAGACCACCGTGGCTGCGGGCTGGACCCTCGATATGAATACCATCAAGATCGAGGATCTCGACTTCGAGTTCAGATTCCAGCTCCAAGCACTTTGTGACGATTATCTCCATGCTCTCGTCGTCTACTTCGACATTGAATTCTCAGCCTGCCACAAGCCCGTTCGCTTTTCCACAGGTCCCTTCTCCGACTACACCCATTGGAAGCAAACCGTCTTCTATCTCAAGGACGTCCTCATGATCACCAAGGGTGACACCATCGACTTCAAGATGCACGTTTCTCCCAACGAAAAGAACAACCGCGATATGAACATCAACCTCGACTACGACTTCACGGGTCGTTACGGTCATCTTCGTGCTTCGCTCGACTATATCCTTCGGTAA___TTCATTGAC

Fln Alignment:

HLKU4M004JOTT3___DGKYKENKIHWWESVYGFNMSTIRDLALKEPIVDVVDSSAVKTTVAAGWTLDMNTIKIEDLDFEFRFQLQALCDDYLHALVVYFDIEFSACHKPVRFSTGPFSDYTHWKQTVFYLKDVLMITKGDTIDFKMHVSPNEKNNRDMNINLDYDFTGR
A9NV48________________DADYKAEKIDFWENVYGFDMTCIKKQAMLEPLVDTVDRNQIVTNCQSLKTMDISKMKPGDASFTASFKLVAERNDYIHALVAYFDVAFTNCHKVTGFSTGPKSRATHWKQTVLYLEDVITICEGEALVGSMTIAQNSKNPRDVDITLEYSISGK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain