SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene151627

Length: 166 nt

UniGene Fasta

>sp_v3.0_unigene151627
GCTGACGCCGTCGTCATTCGCGAGCGCGAGACTGGCCGCTCCCGCGGCTTCGGCTTCGTCACGTACGAGGAGGAGTCGTGCGCTGATGCCGCCATCTCTGCCATGGACAACCAGACCTTTGAGGGCCGCAGCATCCGCGTCTCCAAGGCTCAGGAGCGCCAGTCTG

Ace file of the UniGene sp_v3.0_unigene151627

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glycine-rich RNA-binding protein n=4 Tax=Arthrodermataceae RepID=F2S5E4_TRITO	-	-	5.0e-11	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	59%

Source	Gene names
Sma3	RGP-3;

Source	GOs	Term	Type	e value	Identity
Sma3	nucleotide binding	GO:0000166	Molecular Function	0.0	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3		IPR015465	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G13850.1	ATGRP2, GR-RBP2, GRP2 glycine-rich RNA-binding protein 2 chr4:8021314-8022065 FORWARD LENGTH=158	2.0e-14	59%
RefSeq	Arabidopsis thaliana	NP_001078386.1	glycine-rich RNA-binding protein 2 [Arabidopsis thaliana]	2.0e-14	59%
RefSeq	Populus trichocarpa	XP_002336806.1	predicted protein [Populus trichocarpa]	6.0e-14	59%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NQT3

Fln msg: Distance to subject end: 37 aas, your sequence is shorter than subject: 55 - 157

Fln protein: ADAVVIRERETGRSRGFGFVTYEEESCADAAISAMDNQTFEGRSIRVSKAQERQS

Protein Length: 56

Fln nts: GCTGACGCCGTCGTCATTCGCGAGCGCGAGACTGGCCGCTCCCGCGGCTTCGGCTTCGTCACGTACGAGGAGGAGTCGTGCGCTGATGCCGCCATCTCTGCCATGGACAACCAGACCTTTGAGGGCCGCAGCATCCGCGTCTCCAAGGCTCAGGAGCGCCAGTCTG

Fln Alignment:

HLKU4M004IJEXP___DAVVIRERETGRSRGFGFVTYEEESCADAAISAMDNQTFEGRSIRVSKAQER
A9NQT3________________EAKIINDRETGRSRGFGFVTFASPDEANAAVEAMDGKDLQGRSIRVNIAQER

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain