SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene151541

Length: 390 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene151541
TGGCGCTTCGCACGCCAAGGGAATCGTTCTCGAGAAAGTGGGCGTCGAAGCTAAGCAGCCTAACTCTGCCATCCGCAAGTGCGTCCGTGTTCAGCTGATCAAGAACGGCAAGAAGATCACCGCCTTCGTCCCCAACGACGGTTGCCTCAACTTCATCGAGGAAAACGACGAAGTGCTCGTAGCCGGTTTCGGTCGTAAAGGCCACGCCGTCGGTGACATCCCCGGCGTCCGCTTCAAGATCGTCAAGGTTGCCAACACGTCGCTCATCGCGCTCTTCAAGGGCAAGAAGGAACGACCGCGATCCTAAATTACCGTACACCTTCTACGTTATTGTCTAGGACGCGTTCGCATTGTTGTTTCCGCCTCTTTGTTCACCATATGATCGTTGAC

Ace file of the UniGene sp_v3.0_unigene151541 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	40S ribosomal protein S23 n=5 Tax=Chromadorea RepID=RS23_BRUMA	-	-	0.0	100%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Sma3	40S ribosomal protein S23	-	-	1.975e-10	-

Source	Gene names
Sma3	At3g09680; At5g02960; CHLREDRAFT_205854; F11F8_27; F9G14_270; GSVIVT00023139001; LOC_Os03g60400; LOC_Os10g20910; LOC_Os10g20990; MICPUCDRAFT_48397; MICPUN_89912; OJ1754_E06.3; OSJNAb0078C13.16; OSJNAb0078C13.24; OSJNBa0094J08.4; OSJNBb0023M11.9; OSTLU_321

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	small ribosomal subunit	GO:0015935	Cellular Component	-
Sma3	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	Ribosomal protein S23, eukaryotic/archaeal	IPR005680	-	-
Sma3	Ribosomal protein S12/S23	IPR006032	-	-
Sma3		IPR012287	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3		IPR014778	-	-
Sma3	Myb-like domain	IPR017877	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G02960.1	Ribosomal protein S12/S23 family protein chr5:693280-694396 REVERSE LENGTH=142	86%
RefSeq	Arabidopsis thaliana	NP_195916.1	40S ribosomal protein S23-2 [Arabidopsis thaliana]	86%
RefSeq	Populus trichocarpa	XP_002337575.1	predicted protein [Populus trichocarpa]	86%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKM8

Fln msg: your sequence is shorter than subject: 102 - 142

Fln protein: GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKIVKVANTSLIALFKGKKERPRS*

Protein Length: 103

Fln nts: TGGCGCTTCGCACGCCAAGGGAATCGTTCTCGAGAAAGTGGGCGTCGAAGCTAAGCAGCCTAACTCTGCCATCCGCAAGTGCGTCCGTGTTCAGCTGATCAAGAACGGCAAGAAGATCACCGCCTTCGTCCCCAACGACGGTTGCCTCAACTTCATCGAGGAAAACGACGAAGTGCTCGTAGCCGGTTTCGGTCGTAAAGGCCACGCCGTCGGTGACATCCCCGGCGTCCGCTTCAAGATCGTCAAGGTTGCCAACACGTCGCTCATCGCGCTCTTCAAGGGCAAGAAGGAACGACCGCGATCCTAA___ATTACCGTACACCTTCTACGTTATTGTCTAGGACGCGTTCGCATTGTTGTTTCCGCCTCTTTGTTCACCATATGATCGTTGAC

Fln Alignment:

HLKU4M004I7WZQ___GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKIVKVANTSLIALFKGKKERPRS
B8LKM8________________GSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain