SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene151534

Length: 383 nt

UniGene Fasta

>sp_v3.0_unigene151534
TGAAGCTGGAGCTGTCTCATCTCTTGCCCCTAAAGTCGGTCCTCTTGGTTTGTCCCCAAAGAAGGTTTCTGATGATATCGCCAAGGCTTCTTCAGACTGGAAGGGTCTCAAGATCACTTGTCAATTGACTGTCCAAAACAGAGTTGCCAAAGTATCTGTTTTACCATCTGCTGCTGCCCTCGTAATCAAGGCACTCAAGGAACCTCAAAGAGACAGAAAGAAGGTCAAGCACGTCAAGCACGACGGAAACTTAGCTATTGACGAAGTTTACGAAATCGCCAGAGTTATGAGACCAAAGTCTAACGCCAAGACTTTCCAAGGAACCGTTCTCGAAGTTTTGGGATCTTGTGTTTCAGTAGGATGCAAGGTTGACGGACAATCCC

Ace file of the UniGene sp_v3.0_unigene151534

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative ribosomal protein L12e n=1 Tax=Maconellicoccus hirsutus RepID=A2I468_MACHI	-	-	0.0	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%
Sma3	60S ribosomal protein L12	-	-	6.542e-19	-

Source	Gene names
Sma3	At2g37190; At3g53430; At5g60670; CHLREDRAFT_138697; GSVIVT00018191001; GSVIVT00023193001; MICPUCDRAFT_30629; MICPUN_106714; MUP24.13; MUP24.9; OSJNba0093F12.16; OSTLU_34409; Os02g0699600; Os04g0598200; OsI_08582; OsI_17237; OsJ_08042; OsJ_16016; Ot03g0534

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	rRNA binding	GO:0019843	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L11	IPR000911	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G53430.1	Ribosomal protein L11 family protein chr3:19809895-19810395 REVERSE LENGTH=166	69%
RefSeq	Arabidopsis thaliana	NP_190911.1	60S ribosomal protein L12-2 [Arabidopsis thaliana]	69%
RefSeq	Populus trichocarpa	XP_002308123.1	predicted protein [Populus trichocarpa]	69%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NZX9

Fln msg: Distance to subject end: 18 aas, your sequence is shorter than subject: 127 - 166

Fln protein: EAGAVSSLAPKVGPLGLSPKKVSDDIAKASSDWKGLKITCQLTVQNRVAKVSVLPSAAALVIKALKEPQRDRKKVKHVKHDGNLAIDEVYEIARVMRPKSNAKTFQGTVLEVLGSCVSVGCKVDGQS

Protein Length: 128

Fln nts: TGAAGCTGGAGCTGTCTCATCTCTTGCCCCTAAAGTCGGTCCTCTTGGTTTGTCCCCAAAGAAGGTTTCTGATGATATCGCCAAGGCTTCTTCAGACTGGAAGGGTCTCAAGATCACTTGTCAATTGACTGTCCAAAACAGAGTTGCCAAAGTATCTGTTTTACCATCTGCTGCTGCCCTCGTAATCAAGGCACTCAAGGAACCTCAAAGAGACAGAAAGAAGGTCAAGCACGTCAAGCACGACGGAAACTTAGCTATTGACGAAGTTTACGAAATCGCCAGAGTTATGAGACCAAAGTCTAACGCCAAGACTTTCCAAGGAACCGTTCTCGAAGTTTTGGGATCTTGTGTTTCAGTAGGATGCAAGGTTGACGGACAATCCC

Fln Alignment:

HLKU4M004IQKYY___EAGAVSSLAPKVGPLGLSPKKVSDDIAKASS-DWKGLKITCQLTVQNRVAKVSVLPSAAALVIKALKEPQRDRKKVKHVKHDGNLAIDEVYEIARVMRPKSNAKTFQGTVLEVLGSCVSVGCKVDGQ
A9NZX9________________EVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNIALDDVIEIARVMKPRSMAKELAGTVKEILGTCLSVGCTVDGK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain