SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene151520

Length: 400 nt

UniGene Fasta

>sp_v3.0_unigene151520
AGTTGCGCCAACAACAGAGACGCTCAATCACCTCAATCCTTCAATACTTCCATTCCATCCTCTTTTTACAATGAAGATTTACAAGGATCTCCTCAATGGCGATGAAATGTTCAGCGATTCCTTCCCAGTTGTTGAAGTAGACGATATTATCTTCGAGGTCGAGACCAAATCAATCACCAAATCCGAAGGAAATTACGATATTGGAGGAAATCCTTCTGCAGATGGTGCTGACGAAGGAGAGGCTGTGGATAGCTCCGCTGTTACTGTTAACAACTTGGTCGATGCTATGAGACTTGTTGAATCCCCTTTCGATAAGAAATCATACATGGCCTACATCAAGGGTTACATGAAGAACGTTCTCACCAAATTAAAGGAGACCAACCCAGAAAGAGCCGAAGCC

Ace file of the UniGene sp_v3.0_unigene151520

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Translationally-controlled tumor protein n=1 Tax=Laccaria bicolor S238N-H82 RepID=B0CYE6_LACBS	-	-	3.0e-21	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%
Sma3	Translationally controlled tumor protein	-	-	2.539e-08	-

Source	Gene names
Sma3	POPTRDRAFT_725698; RCOM_0681260; TCTP;

Source	GOs	Term	Type	e value	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	0.0	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3		IPR001983	-	-
Sma3	Mss4/translationally controlled tumour-associated TCTP	IPR011323	-	-
Sma3	Translationally controlled tumour protein, conserved site	IPR018103	-	-
Sma3	Translationally controlled tumour protein	IPR018105	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G16640.1	TCTP translationally controlled tumor protein chr3:5669709-5670729 REVERSE LENGTH=168	3.0e-18	45%
RefSeq	Arabidopsis thaliana	NP_188286.1	translationally-controlled tumor protein-like protein [Arabidopsis thaliana]	4.0e-18	45%
RefSeq	Populus trichocarpa	XP_002314382.1	predicted protein [Populus trichocarpa]	8.0e-21	45%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NPE8

Fln msg: Distance to subject end: 56 aas, your sequence is shorter than subject: 110 - 167

Fln protein: MKIYKDLLNGDEMFSDSFPVVEVDDIIFEVETKSITKSEGNYDIGGNPSADGADEGEAVDSSAVTVNNLVDAMRLVESPFDKKSYMAYIKGYMKNVLTKLKETNPERAEA

Protein Length: 111

Fln nts: AGTTGCGCCAACAACAGAGACGCTCAATCACCTCAATCCTTCAATACTTCCATTCCATCCTCTTTTTACA_-_ATGAAGATTTACAAGGATCTCCTCAATGGCGATGAAATGTTCAGCGATTCCTTCCCAGTTGTTGAAGTAGACGATATTATCTTCGAGGTCGAGACCAAATCAATCACCAAATCCGAAGGAAATTACGATATTGGAGGAAATCCTTCTGCAGATGGTGCTGACGAAGGAGAGGCTGTGGATAGCTCCGCTGTTACTGTTAACAACTTGGTCGATGCTATGAGACTTGTTGAATCCCCTTTCGATAAGAAATCATACATGGCCTACATCAAGGGTTACATGAAGAACGTTCTCACCAAATTAAAGGAGACCAACCCAGAAAGAGCCGAAGCC

Fln Alignment:

HLKU4M004I0CDD___MKIYKDLLNGDEMFSDSFPXXXXXXXXXXXXT-KSITKSEGNYDIGGNPSADGADEGEAVDSSAVTVNNLVDAMRLVESP-FDKKSYMAYIKGYMKNVLTKLKE
A9NPE8________________MIVYQDLLSGDELLSDSFPYNELYNGVLWEVEGKWVVQGAVDVDIGANPSAEGGEE-EGVEDQAVKVVDIVDTFRLQEQPSFDKKQFLAFIKRYIKNLATKLTE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain