SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene151464

Length: 370 nt

UniGene Fasta

>sp_v3.0_unigene151464
GAGAAGACTGCAAGACATGTGAAGGATTGTGTGGACAAGGGTGCGATCGTGAAGTGTGGCGGGGCAGAGCATCAAGAACTCAATGCTGCAGGAGGGAACTTCTATCTCCCAACTGTGCTCACGGAGGTCACCCCAGCGATGAAACCATACTATGAGGAGACCTTCGGTCCCATCGCCCCTCTCTTCCGCTTCAAGACTGAGAAGGAAGTGATCGAGATGGCGAATGACACAAGAGCAGGCTTAGCTGGCTACGCTTGCACCGCAGATCTCTCTCGAGCTTTCCGTGTTGCTGAAGCTCTGGAGTGTGGGCTGGTTGGGATCAATGAAGGAGCGATCTCCAATGAAGTCATCCCGTTTGGCGGCATGAAGG

Ace file of the UniGene sp_v3.0_unigene151464

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Succinic semialdehyde dehydrogenase n=1 Tax=Beggiatoa sp. PS RepID=A7BT69_9GAMM	-	-	6.0e-35	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	33%
Sma3	Succinic semialdehyde dehydrogenase	-	-	3.741e-09	-

Source	Gene names
Sma3	ALDH5A; ALDH5B; ALDH5F1; At1g79440; CHLREDRAFT_118012; GSVIVT00002098001; GSVIVT00002101001; LeSSADH; MICPUCDRAFT_33399; MICPUN_96453; OsI_06045; OsJ_05574; PHYPADRAFT_113098; PHYPADRAFT_171194; POPTRDRAFT_1091519; POPTRDRAFT_277933; RCOM_0605750; SSADH1;

Source	GOs	Term	Type	Identity
Sma3	mitochondrial matrix	GO:0005759	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	succinate-semialdehyde dehydrogenase activity	GO:0004777	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	GO:0016620	Molecular Function	-
Sma3	NAD binding	GO:0051287	Molecular Function	-
Sma3	glutamate decarboxylation to succinate	GO:0006540	Biological Process	-
Sma3	oxygen and reactive oxygen species metabolic process	GO:0006800	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	response to heat	GO:0009408	Biological Process	-
Sma3	response to light stimulus	GO:0009416	Biological Process	-
Sma3	gamma-aminobutyric acid catabolic process	GO:0009450	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Succinic semialdehyde dehydrogenase	IPR010102	-	-
Sma3	Aldehyde dehydrogenase domain	IPR015590	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Aldehyde dehydrogenase, N-terminal	IPR016162	-	-
Sma3	Aldehyde dehydrogenase, C-terminal	IPR016163	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G79440.1	ALDH5F1, SSADH1, SSADH aldehyde dehydrogenase 5F1 chr1:29882525-29887275 REVERSE LENGTH=528	4.0e-33	52%
RefSeq	Arabidopsis thaliana	NP_178062.1	succinate-semialdehyde dehydrogenase [Arabidopsis thaliana]	5.0e-33	52%
RefSeq	Populus trichocarpa	XP_002315079.1	predicted protein [Populus trichocarpa]	6.0e-36	55%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUF0

Fln msg: Distance to subject end: 40 aas, your sequence is shorter than subject: 123 - 503

Fln protein: EKTARHVKDCVDKGAIVKCGGAEHQELNAAGGNFYLPTVLTEVTPAMKPYYEETFGPIAPLFRFKTEKEVIEMANDTRAGLAGYACTADLSRAFRVAEALECGLVGINEGAISNEVIPFGGMK

Protein Length: 124

Fln nts: GAGAAGACTGCAAGACATGTGAAGGATTGTGTGGACAAGGGTGCGATCGTGAAGTGTGGCGGGGCAGAGCATCAAGAACTCAATGCTGCAGGAGGGAACTTCTATCTCCCAACTGTGCTCACGGAGGTCACCCCAGCGATGAAACCATACTATGAGGAGACCTTCGGTCCCATCGCCCCTCTCTTCCGCTTCAAGACTGAGAAGGAAGTGATCGAGATGGCGAATGACACAAGAGCAGGCTTAGCTGGCTACGCTTGCACCGCAGATCTCTCTCGAGCTTTCCGTGTTGCTGAAGCTCTGGAGTGTGGGCTGGTTGGGATCAATGAAGGAGCGATCTCCAATGAAGTCATCCCGTTTGGCGGCATGAAGG

Fln Alignment:

HLKU4M004I025Y___EKTARHVKDCVDKGAIVKCGGAEHQELNAAGGNFYLPTVLTEVTPAMKPYYEETFGPIAPLFRFKTEKEVIEMANDTRAGLAGYACTADLSRAFRVAEALECGLVGINEGAISNEVIPFGGMK
A9NUF0________________KKILNFISVAKEEGATVLCGGRHPEHLKK--GYFIEPTIIGNVNPSMQIWREEVFGPVLTVMTFRTEEEAIDIANDSHYALGGAVLSNNADLCNRVSEHLQAGIVWVNCSQPCFCQAPWGGNK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain