SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene151435

Length: 239 nt

UniGene Fasta

>sp_v3.0_unigene151435
TGAAGGAGAAGGTCAACAACCAAGTGTTGTTTGACAAGGCCACATACGACAAGCTCCAGGCTGAGGTCCCCAAGTACAAGATGATCACACCTTCCGTGCTGTCCGACAGACTTAGGATTAACGGCAGTCTTGCGCGTGCTGCCATTAGAGAGCTTGCATCGAATGGTCTGATCAGACCGATTAGCACACACTCCAAGCAAGTCATCTACACCAGGGCGACCAATGTCTAGTGCAGACAT

Ace file of the UniGene sp_v3.0_unigene151435

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	40S ribosomal protein S25 (Fragment) n=2 Tax=core eudicotyledons RepID=Q6VEV1_SOYBN	-	-	1.0e-24	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%
Sma3	40S ribosomal protein S25	-	-	5.899e-16	-

Source	Gene names
Sma3	AT4G39200; At2g16360; At2g21580; At4g34555; At4g39200; CHLREDRAFT_57302; CM0216.350.nc; F16F14.14; F2G1.15; GSVIVT00001420001; GSVIVT00007016001; GSVIVT00036348001; LOC_Os11g05560; MICPUCDRAFT_28202; MICPUN_82663; OJ1003_C09.15; OSTLU_39313; Os08g0559200;

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	-
Sma3	signal recognition particle	GO:0048500	Cellular Component	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	7S RNA binding	GO:0008312	Molecular Function	-
Sma3	SRP-dependent cotranslational protein targeting to membrane	GO:0006614	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Signal recognition particle, SRP54 subunit, GTPase	IPR000897	-	-
Sma3	Signal recognition particle, SRP54 subunit, M-domain	IPR004125	-	-
Sma3	Signal recognition particle, SRP	IPR004780	-	-
Sma3	Ribosomal protein S25	IPR004977	-	-
Sma3	NMD3	IPR007064	-	-
Sma3	Signal recognition particle, SRP54 subunit, helical bundle	IPR013822	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G21580.1	Ribosomal protein S25 family protein chr2:9236629-9237510 FORWARD LENGTH=108	3.0e-33	74%
RefSeq	Arabidopsis thaliana	NP_001031390.1	40S ribosomal protein S25-2 [Arabidopsis thaliana]	4.0e-33	74%
RefSeq	Populus trichocarpa	XP_002306117.1	predicted protein [Populus trichocarpa]	1.0e-32	74%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NT78

Fln msg: your sequence is shorter than subject: 76 - 108

Fln protein: KEKVNNQVLFDKATYDKLQAEVPKYKMITPSVLSDRLRINGSLARAAIRELASNGLIRPISTHSKQVIYTRATNV*

Protein Length: 77

Fln nts: TGAAGGAGAAGGTCAACAACCAAGTGTTGTTTGACAAGGCCACATACGACAAGCTCCAGGCTGAGGTCCCCAAGTACAAGATGATCACACCTTCCGTGCTGTCCGACAGACTTAGGATTAACGGCAGTCTTGCGCGTGCTGCCATTAGAGAGCTTGCATCGAATGGTCTGATCAGACCGATTAGCACACACTCCAAGCAAGTCATCTACACCAGGGCGACCAATGTCTAG___TGCAGACAT

Fln Alignment:

HLKU4M004IPN28___KEKVNNQVLFDKATYDKLQAEVPKYKMITPSVLSDRLRINGSLARAAIRELASNGLIRPISTHSKQVIYTRATN
A9NT78________________KEKVNNMVLFDQATYDKLISEAPKYKLITPSILSDRLRINGSLARKAIKDLMAKGLIRMISAHSSQQIYTRATN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain