SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene151426

Length: 348 nt

UniGene Fasta

>sp_v3.0_unigene151426
TGTATTACTGGCATACAAGGTGCGCTCTGCGTCTGCAGACAGGCCAGGGTGAATAACGCTCGGTGCGCGCAGAACGACATTCCGGTGTTCTGCCCGGCGATCACGGACGGGAGCATCGGCGACATGGTGTACTTCCACTCGTACCGCAACCCGGGCCTCGTCATCGACATCGCGCAGGACATCCGCCGCATCAACAGCCTCGCCGTCTTCCCGAAGCGCACCGGCGCCATCGTCCTCGGCGGCGGCGTCGTGAAGCACCACATCTGCAACGCCAACCTCATGCGCAACGGCGCCGACTTTGCCGTGTTCGTGAACACGGGCCAGGAGTTTGACGGGAGCGACGCGGGC

Ace file of the UniGene sp_v3.0_unigene151426

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Deoxyhypusine synthase n=1 Tax=Salmo salar RepID=B5X252_SALSA	-	-	7.0e-40	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%
Sma3	Deoxyhypusine synthase	-	-	0.0	-

Source	ECs	Term	Type	e value	Identity
Sma3	Homospermidine synthase (spermidine-specific).	EC:2.5.1.45	-	1.811e-32	-
Sma3	Deoxyhypusine synthase.	EC:2.5.1.46	-	0.0	-

Source	Gene names
Sma3	At5g05920; CHLREDRAFT_128965; CHLREDRAFT_175692; DHS; DHS1; GSVIVT00017873001; HSS1; K18J17_7; LOC_Os03g52970; MICPUCDRAFT_28267; MICPUN_83166; OJ1365_D05.23; OJ1740_D06.14; OSJNBa0057G07.4; OSTLU_35514; Os03g0740600; Os09g0421100; OsI_31399; OsJ_12508; O

Source	GOs	Term	Type	Identity
Sma3	beta-galactosidase complex	GO:0009341	Cellular Component	-
Sma3	beta-galactosidase activity	GO:0004565	Molecular Function	-
Sma3	carbohydrate binding	GO:0030246	Molecular Function	-
Sma3	deoxyhypusine synthase activity	GO:0034038	Molecular Function	-
Sma3	cation binding	GO:0043169	Molecular Function	-
Sma3	homospermidine synthase (spermidine-specific) activity	GO:0050514	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	peptidyl-lysine modification to hypusine	GO:0008612	Biological Process	-
Sma3	embryo sac development	GO:0009553	Biological Process	-
Sma3	deoxyhypusine biosynthetic process from spermidine, using deoxyhypusine synthase	GO:0050983	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cytosolic fatty-acid binding	IPR000463	-	-
Sma3	Deoxyhypusine synthase	IPR002773	-	-
Sma3	Beta galactosidase small chain/ domain 5	IPR004199	-	-
Sma3	Glycoside hydrolase, family 2	IPR006101	-	-
Sma3	Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich	IPR006102	-	-
Sma3	Glycoside hydrolase, family 2, TIM barrel	IPR006103	-	-
Sma3	Glycoside hydrolase, family 2, N-terminal	IPR006104	-	-
Sma3	Phytanoyl-CoA dioxygenase	IPR008775	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain	IPR013812	-	-
Sma3	Glycoside hydrolase-type carbohydrate-binding, subgroup	IPR014718	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G05920.1	DHS, EDA22 deoxyhypusine synthase chr5:1777781-1779699 REVERSE LENGTH=368	9.94922e-44	70%
RefSeq	Arabidopsis thaliana	NP_001031839.1	deoxyhypusine synthase [Arabidopsis thaliana]	9.94922e-44	70%
RefSeq	Populus trichocarpa	XP_002304837.1	predicted protein [Populus trichocarpa]	1.4013e-45	70%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A7T0

Fln msg: Distance to subject end: 50 aas, your sequence is shorter than subject: 75 - 127

Fln protein: MVYFHSYRNPGLVIDIAQDIRRINSLAVFPKRTGAIVLGGGVVKHHICNANLMRNGADFAVFVNTGQEFDGSDAG

Protein Length: 76

Fln nts: TGTATTACTGGCATACAAGGTGCGCTCTGCGTCTGCAGACAGGCCAGGGTGAATAACGCTCGGTGCGCGCAGAACGACATTCCGGTGTTCTGCCCGGCGATCACGGACGGGAGCATCGGCGAC_-_ATGGTGTACTTCCACTCGTACCGCAACCCGGGCCTCGTCATCGACATCGCGCAGGACATCCGCCGCATCAACAGCCTCGCCGTCTTCCCGAAGCGCACCGGCGCCATCGTCCTCGGCGGCGGCGTCGTGAAGCACCACATCTGCAACGCCAACCTCATGCGCAACGGCGCCGACTTTGCCGTGTTCGTGAACACGGGCCAGGAGTTTGACGGGAGCGACGCGGGC

Fln Alignment:

HLKU4M004IU2D5___MVYFHSYRNPGLVIDIAQDIRRINSLAVF--PKRTGAIVLGGGVVKHHICNANLMRNGADFAVFVNTGQEFDGSDAG
D5A7T0________________MLYFHSFRSPGLVVDIVQDIRAINGEAVHASPRKTGMIILGGGIPKHHICNANMMRNGADYAVYINTAQEFDGSDSG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain