SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene151400

Length: 391 nt

UniGene Fasta

>sp_v3.0_unigene151400
CCTCTCTCAATGGCCACAACTCTTCGTCCTTACCTCAATGCAATCAAAACGAACTTTGACGGCTGCCATCTGTCTTCGAACTTTTGGTTCCCAATTGGTCGAGCGACACAACAAGCCCGAAATCGAAAGCAGCAAAAACAAAGAACTTGTCTTGCAACCAGTCGTTGTTGCTCGAAACAACAAGGAGAAGGTTCTCATCGAGAGTTCCATCAATTCTGTTCGAATCAGCATCTGCATCAAGCAAGCTGATGAGATCGAAACGATCCTTTGTAACAAATTCATGAGGTTCTTGATGCAACGCGCTGAACACTTTGTTATCTTGAGGAGGAAGCCTGTTCCTGGTTACGACATCAGCTTTCTGATCTTCAACTCACACACTGAAATGTACTTG

Ace file of the UniGene sp_v3.0_unigene151400

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: putative actin related protein 2/3 complex subunit 4 n=1 Tax=Taeniopygia guttata RepID=UPI000194D266	-	-	2.0e-40	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%

Source	Gene names
Sma3	ARPC4; AT4g14150; At4g14147; CHLREDRAFT_115207; CHLREDRAFT_98121; GSVIVT00038837001; LOC_Os03g63090; OSJNBb0043P23.1; OSJNBb0096M04.125; Os03g0848300; OsI_14322; OsJ_13363; PHYPADRAFT_169316; POPTRDRAFT_827538; RCOM_1018440; arp; dl3115c;

Source	GOs	Term	Type	Identity
Sma3	cytoskeleton	GO:0005856	Cellular Component	-
Sma3	microtubule associated complex	GO:0005875	Cellular Component	-
Sma3	microtubule motor activity	GO:0003777	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	microtubule-based movement	GO:0007018	Biological Process	-
Sma3	actin filament polymerization	GO:0030041	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Kinesin, motor domain	IPR001752	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	ARP23 complex 20kDa subunit	IPR008384	-	-
Sma3	Kinesin-related conserved domain	IPR010544	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G14147.2	-	1.00053e-42	63%
RefSeq	Arabidopsis thaliana	NP_001031632.1	actin related protein 2/3 complex, subunit 4 [Arabidopsis thaliana]	1.00053e-42	63%
RefSeq	Populus trichocarpa	XP_002328858.1	predicted protein [Populus trichocarpa]	8.99998e-41	59%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ADE5

Fln msg: Distance to subject end: 42 aas, your sequence is shorter than subject: 118 - 169

Fln protein: MQSKRTLTAAICLRTFGSQLVERHNKPEIESSKNKELVLQPVVVARNNKEKVLIESSINSVRISICIKQADEIETILCNKFMRFLMQRAEHFVILRRKPVPGYDISFLIFNSHTEMYL

Protein Length: 119

Fln nts: CCTCTCTCAATGGCCACAACTCTTCGTCCTTACCTCA_-_ATGCAATCAAAACGAACTTTGACGGCTGCCATCTGTCTTCGAACTTTTGGTTCCCAATTGGTCGAGCGACACAACAAGCCCGAAATCGAAAGCAGCAAAAACAAAGAACTTGTCTTGCAACCAGTCGTTGTTGCTCGAAACAACAAGGAGAAGGTTCTCATCGAGAGTTCCATCAATTCTGTTCGAATCAGCATCTGCATCAAGCAAGCTGATGAGATCGAAACGATCCTTTGTAACAAATTCATGAGGTTCTTGATGCAACGCGCTGAACACTTTGTTATCTTGAGGAGGAAGCCTGTTCCTGGTTACGACATCAGCTTTCTGATCTTCAACTCACACACTGAAATGTACTTG

Fln Alignment:

HLKU4M004JQENJ___KRTLTAAICLRTFGSQLVERHNKPEIESSKNKELVLQPVVVARNNKEKVLIESSINSVRISICIKQADEIETILCNKFMRFLMQRAEHFVILRRKPVPGYDISFLIFNSHTE
D5ADE5________________RNTLAAAMCLQNFPCQEVERHNKPEVEFKTSPELLLNPVLICRNEAEKCLIETSINSLRISIKVKQADELENILAKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCE

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain